ENSG00000138821


Homo sapiens

Features
Gene ID: ENSG00000138821
  
Biological name :SLC39A8
  
Synonyms : Q9C0K1 / SLC39A8 / solute carrier family 39 member 8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q24
Gene start: 102251041
Gene end: 102431258
  
Corresponding Affymetrix probe sets: 209266_s_at (Human Genome U133 Plus 2.0 Array)   209267_s_at (Human Genome U133 Plus 2.0 Array)   216504_s_at (Human Genome U133 Plus 2.0 Array)   219869_s_at (Human Genome U133 Plus 2.0 Array)   222935_x_at (Human Genome U133 Plus 2.0 Array)   228945_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000394548
Ensembl peptide - ENSP00000349174
Ensembl peptide - ENSP00000378310
NCBI entrez gene - 64116     See in Manteia.
OMIM - 608732
RefSeq - XM_017008542
RefSeq - NM_001135146
RefSeq - NM_001135147
RefSeq - NM_001135148
RefSeq - NM_022154
RefSeq - XM_005263177
RefSeq - XM_011532182
RefSeq - XM_017008540
RefSeq - XM_017008541
RefSeq Peptide - NP_001128618
RefSeq Peptide - NP_001128619
RefSeq Peptide - NP_001128620
RefSeq Peptide - NP_071437
swissprot - Q9C0K1
swissprot - A0A024RDG0
Ensembl - ENSG00000138821
  
Related genetic diseases (OMIM): 616721 - Congenital disorder of glycosylation, type IIn, 616721
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LO018202.1ENSDARG00000113547Danio rerio
 slc39a8ENSDARG00000056757Danio rerio
 SLC39A8ENSGALG00000012298Gallus gallus
 Q91W10ENSMUSG00000053897Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q15043 / SLC39A14 / solute carrier family 39 member 14ENSG0000010463550
Q9ULF5 / SLC39A10 / solute carrier family 39 member 10ENSG0000019695032
Q13433 / SLC39A6 / solute carrier family 39 member 6ENSG0000014142431
Q6P5W5 / SLC39A4 / solute carrier family 39 member 4ENSG0000014780428
Q504Y0 / SLC39A12 / solute carrier family 39 member 12ENSG0000014848227
Q6ZMH5 / SLC39A5 / solute carrier family 39 member 5ENSG0000013954026
Q92504 / SLC39A7 / solute carrier family 39 member 7ENSG0000011247319
Q96H72 / SLC39A13 / solute carrier family 39 member 13ENSG0000016591516


Protein motifs (from Interpro)
Interpro ID Name
 IPR003689  Zinc/iron permease


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006829 zinc ion transport IMP
 biological_processGO:0006882 cellular zinc ion homeostasis IBA
 biological_processGO:0030001 metal ion transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070574 cadmium ion transmembrane transport IEA
 biological_processGO:0071578 zinc ion import across plasma membrane IBA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031090 organelle membrane IDA
 molecular_functionGO:0005385 zinc ion transmembrane transporter activity TAS
 molecular_functionGO:0046873 metal ion transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Zinc influx into cells by the SLC39 gene family


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000483 Astigmatism 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002540 Inability to walk 
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 HP:0002719 Recurrent infections 
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 HP:0003577 Onset at birth 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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