ENSG00000165915


Homo sapiens

Features
Gene ID: ENSG00000165915
  
Biological name :SLC39A13
  
Synonyms : Q96H72 / SLC39A13 / solute carrier family 39 member 13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: p11.2
Gene start: 47407132
Gene end: 47416501
  
Corresponding Affymetrix probe sets: 1552295_a_at (Human Genome U133 Plus 2.0 Array)   225277_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000434290
Ensembl peptide - ENSP00000432499
Ensembl peptide - ENSP00000434684
Ensembl peptide - ENSP00000437186
Ensembl peptide - ENSP00000435845
Ensembl peptide - ENSP00000435076
Ensembl peptide - ENSP00000346956
Ensembl peptide - ENSP00000354689
Ensembl peptide - ENSP00000432302
NCBI entrez gene - 91252     See in Manteia.
OMIM - 608735
RefSeq - XM_017018542
RefSeq - XM_006718381
RefSeq - XM_006718383
RefSeq - XM_006718384
RefSeq - XM_006718385
RefSeq - XM_011520466
RefSeq - XM_011520467
RefSeq - XM_011520468
RefSeq - XM_011520469
RefSeq - XM_011520470
RefSeq - XM_017018540
RefSeq - XM_017018541
RefSeq - NM_001128225
RefSeq - NM_001330245
RefSeq - NM_152264
RefSeq Peptide - NP_689477
RefSeq Peptide - NP_001121697
RefSeq Peptide - NP_001317174
swissprot - G3V1B2
swissprot - K4DIA9
swissprot - E9PSA8
swissprot - Q96H72
swissprot - E9PNE7
swissprot - K4DIB5
swissprot - E9PRH4
swissprot - E9PNN7
Ensembl - ENSG00000165915
  
Related genetic diseases (OMIM): 612350 - Ehlers-Danlos syndrome, spondylodysplastic type, 3, 612350
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc39a13ENSDARG00000000442Danio rerio
 Q5ZI20ENSGALG00000008122Gallus gallus
 Q8BZH0ENSMUSG00000002105Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q92504 / SLC39A7 / solute carrier family 39 member 7ENSG0000011247337
Q6P5W5 / SLC39A4 / solute carrier family 39 member 4ENSG0000014780426
Q6ZMH5 / SLC39A5 / solute carrier family 39 member 5ENSG0000013954024
Q15043 / SLC39A14 / solute carrier family 39 member 14ENSG0000010463524
Q504Y0 / SLC39A12 / solute carrier family 39 member 12ENSG0000014848223
Q9ULF5 / SLC39A10 / solute carrier family 39 member 10ENSG0000019695021
Q9C0K1 / SLC39A8 / solute carrier family 39 member 8ENSG0000013882120
Q13433 / SLC39A6 / solute carrier family 39 member 6ENSG0000014142420


Protein motifs (from Interpro)
Interpro ID Name
 IPR003689  Zinc/iron permease


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006829 zinc ion transport IEA
 biological_processGO:0006882 cellular zinc ion homeostasis ISS
 biological_processGO:0010043 response to zinc ion IEA
 biological_processGO:0030001 metal ion transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0061448 connective tissue development IMP
 biological_processGO:0071577 zinc ion transmembrane transport ISS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IC
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISS
 molecular_functionGO:0005385 zinc ion transmembrane transporter activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0046873 metal ion transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000520 Proptosis 
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 HP:0000592 Blue sclerae 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000926 Platyspondyly 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000963 Thin skin 
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 HP:0000974 Hyperextensible skin 
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 HP:0000978 Ecchymoses 
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 HP:0001015 Prominent superficial veins 
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 HP:0001073 Cigarette-paper scars 
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 HP:0001182 Tapered fingers 
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 HP:0001371 Contractures 
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 HP:0001388 Joint laxity 
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 HP:0001508 Failure to thrive 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0002515 Waddling gait 
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 HP:0002652 Skeletal dysplasia 
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003301 Irregular vertebral endplates "An irregular surface of the vertebral end plates, which are normally relatively smooth." [HPO:curators]
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 HP:0003370 Flat capital femoral epiphyses 
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 HP:0003393 Thenar muscle atrophy 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006429 Broad femoral neck "An abnormally wide femoral neck (which is the process of bone, connecting the femoral head with the femoral shaft)." [HPO:Curators]
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 HP:0008848 Moderately short stature "A moderate degree of short stature." [HPO:curators]
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010489 Aplasia of the palmar creases "Absence of the palmar creases." [HPO:curators]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100864 Hypoplasia of the femoral neck 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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