ENSG00000147804


Homo sapiens

Features
Gene ID: ENSG00000147804
  
Biological name :SLC39A4
  
Synonyms : Q6P5W5 / SLC39A4 / solute carrier family 39 member 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q24.3
Gene start: 144409742
Gene end: 144416895
  
Corresponding Affymetrix probe sets: 219215_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000276833
Ensembl peptide - ENSP00000434512
Ensembl peptide - ENSP00000301305
NCBI entrez gene - 55630     See in Manteia.
OMIM - 607059
RefSeq - XM_006716599
RefSeq - NM_017767
RefSeq - NM_130849
RefSeq Peptide - NP_060237
RefSeq Peptide - NP_570901
swissprot - E9PQ16
swissprot - A6NDY5
swissprot - Q6P5W5
Ensembl - ENSG00000147804
  
Related genetic diseases (OMIM): 201100 - Acrodermatitis enteropathica, 201100
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc39a4ENSDARG00000059361Danio rerio
 Q78IQ7ENSMUSG00000063354Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q504Y0 / SLC39A12 / solute carrier family 39 member 12ENSG0000014848231
Q6ZMH5 / SLC39A5 / solute carrier family 39 member 5ENSG0000013954025
Q9ULF5 / SLC39A10 / solute carrier family 39 member 10ENSG0000019695025
Q13433 / SLC39A6 / solute carrier family 39 member 6ENSG0000014142424
Q15043 / SLC39A14 / solute carrier family 39 member 14ENSG0000010463521
Q9C0K1 / SLC39A8 / solute carrier family 39 member 8ENSG0000013882120
Q92504 / SLC39A7 / solute carrier family 39 member 7ENSG0000011247319
Q96H72 / SLC39A13 / solute carrier family 39 member 13ENSG0000016591515


Protein motifs (from Interpro)
Interpro ID Name
 IPR003689  Zinc/iron permease


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006829 zinc ion transport IEA
 biological_processGO:0006882 cellular zinc ion homeostasis IBA
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0030001 metal ion transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071578 zinc ion import across plasma membrane IBA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IDA
 cellular_componentGO:0055038 recycling endosome membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005385 zinc ion transmembrane transporter activity IDA
 molecular_functionGO:0046873 metal ion transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Zinc influx into cells by the SLC39 gene family
Defective SLC39A4 causes acrodermatitis enteropathica, zinc-deficiency type (AEZ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000206 Glossitis "Inflammation of the tongue." [HPO:sdoelken]
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 HP:0000221 Furrowed tongue "Accentuation of the grooves on the dorsal surface of the tongue." [pmid:19125428]
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 HP:0000224 Decreased taste sensation 
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000712 Emotional lability 
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 HP:0000737 Irritability 
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 HP:0000958 Dry skin 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001807 Nail ridging 
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 HP:0001818 Paronychia "The nail disease paronychia is an often-tender bacterial or fungal hand infection or foot infection where the nail and skin meet at the side or the base of a finger or toenail. The infection can start suddenly (acute paronychia) or gradually (chronic paronychia)." [HPO:curators]
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 HP:0001824 Weight loss 
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 HP:0002014 Diarrhea 
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 HP:0002024 Malabsorption 
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 HP:0002028 Chronic diarrhea 
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 HP:0002039 Anorexia 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002293 Alopecia of scalp 
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 HP:0003282 Low alkaline phosphatase "Abnormally reduced serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003593 Early onset 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004396 Poor appetite 
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 HP:0005401 Frequent candida infections 
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 HP:0005435 Impaired T cell function 
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008230 Decreased testosterone in males 
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 HP:0008402 Longitudinally grooved fingernails 
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 HP:0008734 Decreased testicular size 
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0100825 Cheilitis "Inflammation of the lip." [HPO:sdoelken]
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 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
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 HP:0200039 skin pustule "A small elevation of the skin containing cloudy or purulent material usually consisting of necrotic inflammatory cells." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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