ENSG00000139324


Homo sapiens

Features
Gene ID: ENSG00000139324
  
Biological name :TMTC3
  
Synonyms : Q6ZXV5 / TMTC3 / transmembrane and tetratricopeptide repeat containing 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q21.32
Gene start: 88142296
Gene end: 88199887
  
Corresponding Affymetrix probe sets: 1560017_at (Human Genome U133 Plus 2.0 Array)   226600_at (Human Genome U133 Plus 2.0 Array)   226604_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000266712
Ensembl peptide - ENSP00000447640
Ensembl peptide - ENSP00000448566
Ensembl peptide - ENSP00000448733
NCBI entrez gene - 160418     See in Manteia.
OMIM - 617218
RefSeq - XM_011537980
RefSeq - NM_181783
RefSeq Peptide - NP_861448
swissprot - F8W044
swissprot - F8VR71
swissprot - Q6ZXV5
swissprot - F8VRY4
Ensembl - ENSG00000139324
  
Related genetic diseases (OMIM): 617255 - Lissencephaly 8, 617255
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tmtc3ENSDARG00000062846Danio rerio
 ENSGALG00000033106Gallus gallus
 ENSGALG00000011198Gallus gallus
 Tmtc3ENSMUSG00000036676Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TMTC4 / Q5T4D3 / transmembrane and tetratricopeptide repeat containing 4ENSG0000012524728
TMTC1 / Q8IUR5 / transmembrane and tetratricopeptide repeat containing 1ENSG0000013368726
TMTC2 / Q8N394 / transmembrane and tetratricopeptide repeat containing 2ENSG0000017910426
OGT / O15294 / O-linked N-acetylglucosamine (GlcNAc) transferaseENSG0000014716215


Protein motifs (from Interpro)
Interpro ID Name
 IPR001440  Tetratricopeptide repeat 1
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR013618  Domain of unknown function DUF1736
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034976 response to endoplasmic reticulum stress IMP
 biological_processGO:1901800 positive regulation of proteasomal protein catabolic process IMP
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000648 Optic atrophy 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002085 Occipital encephalocele 
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 HP:0002119 Ventriculomegaly 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003593 Early onset 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0012447 Abnormal myelination "Any anomaly in the process by which myelin sheaths are formed and maintained around neurons." [HPO:probinson, MP:0000920]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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