ENSG00000140382


Homo sapiens

Features
Gene ID: ENSG00000140382
  
Biological name :HMG20A
  
Synonyms : high mobility group 20A / HMG20A / Q9NP66
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q24.3
Gene start: 77420412
Gene end: 77485607
  
Corresponding Affymetrix probe sets: 218152_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000454136
Ensembl peptide - ENSP00000453592
Ensembl peptide - ENSP00000453727
Ensembl peptide - ENSP00000336856
Ensembl peptide - ENSP00000371133
Ensembl peptide - ENSP00000452665
Ensembl peptide - ENSP00000452847
Ensembl peptide - ENSP00000452864
Ensembl peptide - ENSP00000453498
NCBI entrez gene - 10363     See in Manteia.
OMIM - 605534
RefSeq - XM_011521158
RefSeq - NM_001304504
RefSeq - NM_001304505
RefSeq - NM_018200
RefSeq Peptide - NP_060670
RefSeq Peptide - NP_001291433
RefSeq Peptide - NP_001291434
swissprot - Q9NP66
swissprot - H0YK55
swissprot - H0YKL0
swissprot - H0YKM5
swissprot - H0YMG2
swissprot - H0YM80
swissprot - H0YMS9
swissprot - H0YNS8
Ensembl - ENSG00000140382
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hmg20aENSDARG00000031198Danio rerio
 HMG20AENSGALG00000041641Gallus gallus
 Hmg20aENSMUSG00000032329Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HMG20B / Q9P0W2 / high mobility group 20BENSG0000006496144


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006325 chromatin organization NAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated NAS
 biological_processGO:0033234 negative regulation of protein sumoylation IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr