ENSG00000140522


Homo sapiens

Features
Gene ID: ENSG00000140522
  
Biological name :RLBP1
  
Synonyms : P12271 / retinaldehyde binding protein 1 / RLBP1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q26.1
Gene start: 89209869
Gene end: 89221751
  
Corresponding Affymetrix probe sets: 206154_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000268125
Ensembl peptide - ENSP00000454740
Ensembl peptide - ENSP00000457251
NCBI entrez gene - 6017     See in Manteia.
OMIM - 180090
RefSeq - XM_017022460
RefSeq - NM_000326
RefSeq - XM_011521870
RefSeq Peptide - NP_000317
swissprot - P12271
swissprot - H3BTN3
swissprot - H3BN92
Ensembl - ENSG00000140522
  
Related genetic diseases (OMIM): 136880 - Fundus albipunctatus, 136880
  607475 - Bothnia retinal dystrophy, 607475
  607476 - Newfoundland rod-cone dystrophy, 607476
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rlbp1aENSDARG00000012504Danio rerio
 rlbp1bENSDARG00000045808Danio rerio
 RLBP1ENSGALG00000006676Gallus gallus
 Rlbp1ENSMUSG00000039194Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CLVS1 / Q8IUQ0 / clavesin 1ENSG0000017718235
CLVS2 / Q5SYC1 / clavesin 2ENSG0000014635234
TTPAL / Q9BTX7 / alpha tocopherol transfer protein likeENSG0000012412032
TTPA / P49638 / alpha tocopherol transfer proteinENSG0000013756123


Protein motifs (from Interpro)
Interpro ID Name
 IPR001251  CRAL-TRIO lipid binding domain
 IPR011074  CRAL/TRIO, N-terminal domain
 IPR032941  Retinaldehyde-binding protein 1
 IPR036273  CRAL/TRIO, N-terminal domain superfamily
 IPR036865  CRAL-TRIO lipid binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001523 retinoid metabolic process TAS
 biological_processGO:0006776 vitamin A metabolic process TAS
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0044297 cell body IEA
 molecular_functionGO:0005502 11-cis retinal binding IEA
 molecular_functionGO:0016918 retinal binding IEA
 molecular_functionGO:0019841 retinol binding IEA


Pathways (from Reactome)
Pathway description
The retinoid cycle in cones (daylight vision)
Retinoid cycle disease events
The canonical retinoid cycle in rods (twilight vision)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000035 Abnormality of the testis 
Show

 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
Show

 HP:0000405 Hearing loss, conductive 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000551 Abnormal color vision 
Show

 HP:0000556 Retinal dystrophy 
Show

 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
Show

 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
Show

 HP:0000602 Ophthalmoplegia 
Show

 HP:0000608 Macular degeneration 
Show

 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
Show

 HP:0000618 Blindness 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000662 Night blindness 
Show

 HP:0000842 Hyperinsulinemia 
Show

 HP:0000987 Scarring 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
Show

 HP:0005978 Noninsulin-dependent diabetes mellitus 
Show

 HP:0007675 Progressive night blindness 
Show

 HP:0007703 Abnormal retinal pigmentation 
Show

 HP:0008046 Abnormality of the retinal vasculature 
Show

 HP:0008736 Hypoplasia of penis 
Show

 HP:0030642 Fundus albipunctatus 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000121039 RDH10 / Q8IZV5 / retinol dehydrogenase 10  / reaction
 ENSG00000135437 RDH5 / Q92781 / retinol dehydrogenase 5  / reaction
 ENSG00000147160 AWAT2 / Q6E213 / acyl-CoA wax alcohol acyltransferase 2  / reaction
 ENSG00000072042 RDH11 / Q8TC12 / retinol dehydrogenase 11 (all-trans/9-cis/11-cis)  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr