ENSG00000143669


Homo sapiens

Features
Gene ID: ENSG00000143669
  
Biological name :LYST
  
Synonyms : lysosomal trafficking regulator / LYST / Q99698
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q42.3
Gene start: 235661041
Gene end: 235883640
  
Corresponding Affymetrix probe sets: 1562511_at (Human Genome U133 Plus 2.0 Array)   203518_at (Human Genome U133 Plus 2.0 Array)   210943_s_at (Human Genome U133 Plus 2.0 Array)   215415_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000417168
Ensembl peptide - ENSP00000374443
Ensembl peptide - ENSP00000374444
NCBI entrez gene - 1130     See in Manteia.
OMIM - 606897
RefSeq - XM_017000150
RefSeq - XM_011544032
RefSeq - XM_011544033
RefSeq - XM_011544034
RefSeq - XM_011544035
RefSeq - XM_011544036
RefSeq - NM_000081
RefSeq - NM_001301365
RefSeq - XM_011544031
RefSeq Peptide - NP_000072
RefSeq Peptide - NP_001288294
swissprot - H7C4F5
swissprot - Q99698
swissprot - A0A0A0MRZ6
Ensembl - ENSG00000143669
  
Related genetic diseases (OMIM): 214500 - Chediak-Higashi syndrome, 214500
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lystENSDARG00000008575Danio rerio
 LYSTENSGALG00000032840Gallus gallus
 LystENSMUSG00000019726Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WDFY3 / Q8IZQ1 / WD repeat and FYVE domain containing 3ENSG0000016362516
NBEAL1 / Q6ZS30 / neurobeachin like 1ENSG0000014442615
WDFY4 / Q6ZS81 / WDFY family member 4ENSG0000012881515
NBEAL2 / Q6ZNJ1 / neurobeachin like 2ENSG0000016079615
NBEA / Q8NFP9 / neurobeachinENSG0000017291513
LRBA / P50851 / LPS responsive beige-like anchor proteinENSG0000019858912
WDR81 / Q562E7 / WD repeat domain 81ENSG000001677167
NSMAF / Q92636 / neutral sphingomyelinase activation associated factorENSG000000356816


Protein motifs (from Interpro)
Interpro ID Name
 IPR000409  BEACH domain
 IPR001680  WD40 repeat
 IPR011993  PH-like domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016024  Armadillo-type fold
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR023362  PH-BEACH domain
 IPR030464  Lysosomal-trafficking regulator
 IPR036322  WD40-repeat-containing domain superfamily
 IPR036372  BEACH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007040 lysosome organization IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0030595 leukocyte chemotaxis ISS
 biological_processGO:0032438 melanosome organization ISS
 biological_processGO:0032510 endosome to lysosome transport via multivesicular body sorting pathway IMP
 biological_processGO:0033364 mast cell secretory granule organization ISS
 biological_processGO:0042267 natural killer cell mediated cytotoxicity IMP
 biological_processGO:0042742 defense response to bacterium ISS
 biological_processGO:0042832 defense response to protozoan ISS
 biological_processGO:0043473 pigmentation IMP
 biological_processGO:0051607 defense response to virus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IDA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000225 Gingival bleeding 
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 HP:0000230 Gingivitis 
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 HP:0000421 Epistaxis 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000704 Periodontal disease 
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000978 Ecchymoses 
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001010 Hypopigmentation of the skin 
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 HP:0001104 Macular hypoplasia 
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 HP:0001107 Ocular albinism 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001276 Hypertonia 
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 HP:0001284 Areflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0001882 Leukopenia 
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 HP:0001903 Anemia 
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 HP:0001928 Abnormality of coagulation 
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 HP:0001945 Fever 
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 HP:0002063 Rigidity 
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002071 Extrapyramidal signs 
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 HP:0002180 Neurodegeneration 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002311 Incoordination 
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 HP:0002376 Developmental regression 
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002721 Immunodeficiency 
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0005406 Recurrent bacterial skin infections 
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 HP:0005429 Recurrent cutaneous and systemic pyogenic infections 
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 HP:0005592 Giant melanosomes in melanocytes 
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 HP:0005599 Hair hypopigmentation 
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 HP:0006824 Cranial nerve paralysis 
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 HP:0007133 Progressive peripheral neuropathy 
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 HP:0007440 Generalized hyperpigmentation 
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 HP:0007513 Generalized hypopigmentation 
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 HP:0007663 Decreased central vision 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0011364 White hair "Hypopigmented hair that appears white." [DDD:cmoss]
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 HP:0012145 Abnormality of multiple cell lineages in the bone marrow 
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 HP:0100022 Abnormality of movement "An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements." [HPO:probinson]
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 HP:0100838 Recurrent cutaneous abscess formation "An increased susceptibility to cutaneous abscess formation, as manifested by a medical history of recurrent cutaneous abscesses." [HPO:probinson]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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