ENSDARG00000008575


Danio rerio

Features
Gene ID: ENSDARG00000008575
  
Biological name :lyst
  
Synonyms : lysosomal trafficking regulator / lyst
  
Possible biological names infered from orthology : Q99698
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 49867268
Gene end: 50002852
  
Corresponding Affymetrix probe sets: Dr.16565.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000090212
swissprot - E9QFZ1
ZFIN ID - ZDB-GENE-070702-1
Ensembl - ENSDARG00000008575
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LYSTENSGALG00000032840Gallus gallus
 LYSTENSG00000143669Homo sapiens
 LystENSMUSG00000019726Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nbeab / neurobeachin b / NBEA* / Q9EPN1* / Q8NFP9* / neurobeachin*ENSDARG0000010518417
wdfy3 / WD repeat and FYVE domain containing 3 / Q6VNB8* / Q8IZQ1*ENSDARG0000007889017
nbeal2 / neurobeachin-like 2 / Q6ZNJ1* / Q6ZQA0* / Neurobeachin-like protein 2 *ENSDARG0000009864117
nbeaa / neurobeachin a / NBEA* / Q9EPN1* / Q8NFP9* / neurobeachin*ENSDARG0000007008017
lrba / LPS-responsive vesicle trafficking, beach and anchor containing / P50851* / LPS responsive beige-like anchor protein*ENSDARG0000003110816
nbeal1 / neurobeachin-like 1 / Q6ZS30*ENSDARG0000009954716
wdfy4 / WDFY family member 4 / Q6ZS81* / WD repeat and FYVE domain containing 4*ENSDARG000000770098
nsmaf / neutral sphingomyelinase (N-SMase) activation associated factor / Q92636* / neutral sphingomyelinase activation associated factor*ENSDARG000000519208
wdr81 / E7FEV0 / WD repeat domain 81 / Q562E7* / Q5ND34*ENSDARG000000797027


Protein motifs (from Interpro)
Interpro ID Name
 IPR000409  BEACH domain
 IPR001680  WD40 repeat
 IPR011989  Armadillo-like helical
 IPR011993  PH-like domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR023362  PH-BEACH domain
 IPR030464  Lysosomal-trafficking regulator


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007040 lysosome organization IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000123 liver liver color , abnormal
liver increased size , abnormal
liver fatty , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr