ENSDARG00000078890


Danio rerio

Features
Gene ID: ENSDARG00000078890
  
Biological name :wdfy3
  
Synonyms : wdfy3 / WD repeat and FYVE domain containing 3
  
Possible biological names infered from orthology : Q6VNB8 / Q8IZQ1
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 40052930
Gene end: 40190949
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000121742
Ensembl peptide - ENSDARP00000143348
NCBI entrez gene - 568432     See in Manteia.
RefSeq - XM_001921706
RefSeq - XM_017356279
RefSeq - XM_017356280
swissprot - F1Q6D6
swissprot - A0A286Y869
swissprot - A5PMK7
ZFIN ID - ZDB-GENE-070705-153
Ensembl - ENSDARG00000078890
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WDFY3ENSG00000163625Homo sapiens
 Wdfy3ENSMUSG00000043940Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nbeal1 / neurobeachin-like 1 / Q6ZS30*ENSDARG0000009954715
nbeal2 / neurobeachin-like 2 / Q6ZNJ1* / Q6ZQA0* / Neurobeachin-like protein 2 *ENSDARG0000009864115
lyst / lysosomal trafficking regulator / Q99698*ENSDARG0000000857513
nbeaa / neurobeachin a / NBEA* / Q9EPN1* / Q8NFP9* / neurobeachin*ENSDARG0000007008013
lrba / LPS-responsive vesicle trafficking, beach and anchor containing / P50851* / LPS responsive beige-like anchor protein*ENSDARG0000003110813
nbeab / neurobeachin b / NBEA* / Q9EPN1* / Q8NFP9* / neurobeachin*ENSDARG0000010518412
wdfy4 / WDFY family member 4 / Q6ZS81* / WD repeat and FYVE domain containing 4*ENSDARG0000007700910
wdr81 / E7FEV0 / WD repeat domain 81 / Q562E7* / Q5ND34*ENSDARG000000797026
nsmaf / neutral sphingomyelinase (N-SMase) activation associated factor / Q92636* / neutral sphingomyelinase activation associated factor*ENSDARG000000519206


Protein motifs (from Interpro)
Interpro ID Name
 IPR000306  FYVE zinc finger
 IPR000409  BEACH domain
 IPR001680  WD40 repeat
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR011989  Armadillo-like helical
 IPR011993  PH-like domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016024  Armadillo-type fold
 IPR017455  Zinc finger, FYVE-related
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR023362  PH-BEACH domain
 IPR031570  Domain of unknown function DUF4704


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr