ENSG00000150893


Homo sapiens

Features
Gene ID: ENSG00000150893
  
Biological name :FREM2
  
Synonyms : FRAS1 related extracellular matrix protein 2 / FREM2 / Q5SZK8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q13.3
Gene start: 38687129
Gene end: 38887131
  
Corresponding Affymetrix probe sets: 230964_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000280481
NCBI entrez gene - 341640     See in Manteia.
OMIM - 608945
RefSeq - NM_207361
RefSeq Peptide - NP_997244
swissprot - Q5SZK8
Ensembl - ENSG00000150893
  
Related genetic diseases (OMIM): 617666 - Fraser syndrome 2, 617666
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 frem2aENSDARG00000076856Danio rerio
 frem2bENSDARG00000102626Danio rerio
 FREM2ENSGALG00000033671Gallus gallus
 Frem2ENSMUSG00000037016Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FREM3 / P0C091 / FRAS1 related extracellular matrix 3ENSG0000018309039
FRAS1 / Q86XX4 / Fraser extracellular matrix complex subunit 1ENSG0000013875931
FREM1 / Q5H8C1 / FRAS1 related extracellular matrix 1ENSG0000016494622
CSPG4 / Q6UVK1 / chondroitin sulfate proteoglycan 4ENSG0000017354613


Protein motifs (from Interpro)
Interpro ID Name
 IPR003644  Na-Ca exchanger/integrin-beta4
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IEA
 biological_processGO:0002009 morphogenesis of an epithelium IEA
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0048839 inner ear development IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000046 Scrotal hypoplasia 
Show

 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
Show

 HP:0000054 Micropenis 
Show

 HP:0000062 Ambiguous genitalia 
Show

 HP:0000068 Urethral atresia 
Show

 HP:0000089 Renal hypoplasia 
Show

 HP:0000148 Vaginal atresia 
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000183 Difficulty in tongue movements 
Show

 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000368 Low-set, posteriorly rotated ears 
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
Show

 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
Show

 HP:0000405 Hearing loss, conductive 
Show

 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
Show

 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000445 Broad nose 
Show

 HP:0000452 Choanal stenosis "Abnormal narrowing of the choana (the posterior nasal aperture)." [HPO:curators]
Show

 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
Show

 HP:0000561 Absent eyelashes "Lack of eyelashes." [HPO:curators]
Show

 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
Show

 HP:0000618 Blindness 
Show

 HP:0000636 Upper eyelid coloboma "A `coloboma` (HP:0000589) of the `upper eyelid` (FMA:54439)." [HPO:probinson]
Show

 HP:0000678 Dental overcrowding 
Show

 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
Show

 HP:0000777 Abnormality of the thymus "Abnormality of the thymus, an organ located in the upper anterior portion of the chest cavity just behind the sternum and whose main function is to provide an environment for T lymphocyte maturation." [HPO:curators]
Show

 HP:0000813 Bicornuate uterus 
Show

 HP:0001126 Cryptophthalmos "Cryptophthalmos is a condition of total absence of eyelids and the skin of forehead is continuous with that of cheek, in which the eyeball is completely concealed by the skin, which is stretched over the orbital cavity." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001362 Skull defect "A localized defect in the bone of the skull resulting from abnormal embryological development. The defect is covered by normal skin. In some cases, skull x-rays have shown underlying lytic bone lesions which have closed before the age of one year." [HPO:curators]
Show

 HP:0001522 Death in infancy 
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0001539 Omphalocele 
Show

 HP:0001551 Abnormality of the umbilicus "Abnormality of the umbilicus (also known as the belly button or the navel)." [HPO:curators]
Show

 HP:0001602 Laryngeal stenosis 
Show

 HP:0001607 Subglottic stenosis 
Show

 HP:0001627 Cardiac abnormality "An abnormality of the `heart` (FMA:7088)." [HPO:probinson]
Show

 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0002006 Facial cleft 
Show

 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
Show

 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
Show

 HP:0002084 Encephalocele 
Show

 HP:0002089 Pulmonary hypoplasia 
Show

 HP:0002101 Abnormal lung lobation "Defects in the formation of pulmonary lobules." [HPO:curators]
Show

 HP:0002223 Absent eyebrows 
Show

 HP:0002244 Abnormality of the small intestine 
Show

 HP:0002475 Meningomyelocele 
Show

 HP:0002536 Abnormal cortical gyration "An abnormality of the gyri (i.e., the ridges) of the cerebral cortex of the brain." [HPO:curators]
Show

 HP:0002777 Tracheal stenosis 
Show

 HP:0003183 Wide pubic symphysis "Abnormally increased width of the pubic symphysis is the midline cartilaginous joint uniting the superior rami of the left and right pubic bones." [HPO:curators]
Show

 HP:0003191 Notched nasal alae 
Show

 HP:0003422 Vertebral segmentation defects 
Show

 HP:0004112 Midline nasal groove "An abnormal groove on the midline of the nose that may extend to the nasal tip." [HPO:curators]
Show

 HP:0004378 Abnormality of the anus "Abnormality of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
Show

 HP:0004397 Ectopic anus "Abnormal displacement or malposition of the anus." [HPO:curators]
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0005325 Unusual hairline with hair growth on temples extending to lateral eyebrow 
Show

 HP:0005352 Severe t-cell immunodeficiency 
Show

 HP:0005950 Partial laryngeal atresia 
Show

 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0006610 Wide intermamillary distance 
Show

 HP:0006714 Aplasia/Hypoplasia of the sternum 
Show

 HP:0007633 Bilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of both eyes." [HPO:curators]
Show

 HP:0007925 Lacrimal duct aplasia or stenosis 
Show

 HP:0007957 Variable degree of corneal opacities 
Show

 HP:0007993 Absent or malformed lacrimal ducts 
Show

 HP:0008559 Hypoplastic superior helix 
Show

 HP:0008572 External ear malformation 
Show

 HP:0008609 Middle ear malformations 
Show

 HP:0008665 Hypertrophic clitoris 
Show

 HP:0008678 Renal hypoplasia/aplasia 
Show

 HP:0008736 Hypoplasia of penis 
Show

 HP:0008750 Laryngeal atresia 
Show

 HP:0009601 Aplasia/Hypoplasia of the thumb "Hypoplastic/small or absent thumb." [HPO:curators]
Show

 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand "Small or missing phalangeal bones of the fingers of the hand." [HPO:curators]
Show

 HP:0010297 Bifid tongue "Tongue with a median apical indentation or fork." [pmid:19125428]
Show

 HP:0010458 Female pseudohermaphroditism "Hermaphroditism refers to a discrepancy between the morphology of the gonads and that of the external genitalia. In female pseudohermaphroditism, the genotype is female (XX) and the gonads are ovaries, but the external genitalia are virilized." [HPO:curators]
Show

 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
Show

 HP:0010720 Abnormal hair growth pattern "An abnormality of the distribution of hair growth." [HPO:probinson]
Show

 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr