ENSG00000138759


Homo sapiens

Features
Gene ID: ENSG00000138759
  
Biological name :FRAS1
  
Synonyms : FRAS1 / Fraser extracellular matrix complex subunit 1 / Q86XX4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q21.21
Gene start: 78057570
Gene end: 78544269
  
Corresponding Affymetrix probe sets: 1552503_at (Human Genome U133 Plus 2.0 Array)   1560153_at (Human Genome U133 Plus 2.0 Array)   220910_at (Human Genome U133 Plus 2.0 Array)   226145_s_at (Human Genome U133 Plus 2.0 Array)   243935_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000423809
Ensembl peptide - ENSP00000423645
Ensembl peptide - ENSP00000425583
Ensembl peptide - ENSP00000326330
Ensembl peptide - ENSP00000422221
Ensembl peptide - ENSP00000422834
NCBI entrez gene - 80144     See in Manteia.
OMIM - 607830
RefSeq - XM_006714316
RefSeq - NM_001166133
RefSeq - NM_025074
RefSeq Peptide - NP_001159605
RefSeq Peptide - NP_079350
swissprot - D6RCP6
swissprot - H0Y9C9
swissprot - H0Y9A6
swissprot - H0Y8V2
swissprot - Q86XX4
Ensembl - ENSG00000138759
  
Related genetic diseases (OMIM): 219000 - Fraser syndrome 1, 219000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fras1ENSDARG00000054619Danio rerio
 FRAS1ENSGALG00000010316Gallus gallus
 Fras1ENSMUSG00000034687Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FREM2 / Q5SZK8 / FRAS1 related extracellular matrix protein 2ENSG0000015089324
FREM3 / P0C091 / FRAS1 related extracellular matrix 3ENSG0000018309015
FREM1 / Q5H8C1 / FRAS1 related extracellular matrix 1ENSG0000016494613
CSPG4 / Q6UVK1 / chondroitin sulfate proteoglycan 4ENSG0000017354610


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001007  VWFC domain
 IPR003644  Na-Ca exchanger/integrin-beta4
 IPR006212  Furin-like repeat
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR021157  Cytochrome c1, transmembrane anchor, C-terminal
 IPR032822  Extracellular matrix protein FRAS1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002009 morphogenesis of an epithelium IEA
 biological_processGO:0003338 metanephros morphogenesis IEA
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0060021 roof of mouth development IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031012 extracellular matrix ISS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000046 Scrotal hypoplasia 
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000062 Ambiguous genitalia 
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 HP:0000068 Urethral atresia 
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 HP:0000089 Renal hypoplasia 
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 HP:0000148 Vaginal atresia 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000183 Difficulty in tongue movements 
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000445 Broad nose 
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 HP:0000452 Choanal stenosis "Abnormal narrowing of the choana (the posterior nasal aperture)." [HPO:curators]
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 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
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 HP:0000561 Absent eyelashes "Lack of eyelashes." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000636 Upper eyelid coloboma "A `coloboma` (HP:0000589) of the `upper eyelid` (FMA:54439)." [HPO:probinson]
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 HP:0000678 Dental overcrowding 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000777 Abnormality of the thymus "Abnormality of the thymus, an organ located in the upper anterior portion of the chest cavity just behind the sternum and whose main function is to provide an environment for T lymphocyte maturation." [HPO:curators]
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 HP:0000813 Bicornuate uterus 
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 HP:0001126 Cryptophthalmos "Cryptophthalmos is a condition of total absence of eyelids and the skin of forehead is continuous with that of cheek, in which the eyeball is completely concealed by the skin, which is stretched over the orbital cavity." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001362 Skull defect "A localized defect in the bone of the skull resulting from abnormal embryological development. The defect is covered by normal skin. In some cases, skull x-rays have shown underlying lytic bone lesions which have closed before the age of one year." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001539 Omphalocele 
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 HP:0001551 Abnormality of the umbilicus "Abnormality of the umbilicus (also known as the belly button or the navel)." [HPO:curators]
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 HP:0001602 Laryngeal stenosis 
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 HP:0001607 Subglottic stenosis 
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 HP:0001627 Cardiac abnormality "An abnormality of the `heart` (FMA:7088)." [HPO:probinson]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0002006 Facial cleft 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
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 HP:0002084 Encephalocele 
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002101 Abnormal lung lobation "Defects in the formation of pulmonary lobules." [HPO:curators]
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 HP:0002223 Absent eyebrows 
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 HP:0002244 Abnormality of the small intestine 
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 HP:0002475 Meningomyelocele 
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 HP:0002536 Abnormal cortical gyration "An abnormality of the gyri (i.e., the ridges) of the cerebral cortex of the brain." [HPO:curators]
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 HP:0002777 Tracheal stenosis 
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 HP:0003183 Wide pubic symphysis "Abnormally increased width of the pubic symphysis is the midline cartilaginous joint uniting the superior rami of the left and right pubic bones." [HPO:curators]
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 HP:0003191 Notched nasal alae 
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 HP:0003422 Vertebral segmentation defects 
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 HP:0004112 Midline nasal groove "An abnormal groove on the midline of the nose that may extend to the nasal tip." [HPO:curators]
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 HP:0004378 Abnormality of the anus "Abnormality of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0004397 Ectopic anus "Abnormal displacement or malposition of the anus." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005325 Unusual hairline with hair growth on temples extending to lateral eyebrow 
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 HP:0005352 Severe t-cell immunodeficiency 
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 HP:0005950 Partial laryngeal atresia 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006610 Wide intermamillary distance 
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 HP:0006714 Aplasia/Hypoplasia of the sternum 
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 HP:0007633 Bilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of both eyes." [HPO:curators]
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 HP:0007925 Lacrimal duct aplasia or stenosis 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0007993 Absent or malformed lacrimal ducts 
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 HP:0008559 Hypoplastic superior helix 
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 HP:0008572 External ear malformation 
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 HP:0008609 Middle ear malformations 
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 HP:0008665 Hypertrophic clitoris 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008750 Laryngeal atresia 
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 HP:0009601 Aplasia/Hypoplasia of the thumb "Hypoplastic/small or absent thumb." [HPO:curators]
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 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand "Small or missing phalangeal bones of the fingers of the hand." [HPO:curators]
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 HP:0010297 Bifid tongue "Tongue with a median apical indentation or fork." [pmid:19125428]
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 HP:0010458 Female pseudohermaphroditism "Hermaphroditism refers to a discrepancy between the morphology of the gonads and that of the external genitalia. In female pseudohermaphroditism, the genotype is female (XX) and the gonads are ovaries, but the external genitalia are virilized." [HPO:curators]
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 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
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 HP:0010720 Abnormal hair growth pattern "An abnormality of the distribution of hair growth." [HPO:probinson]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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