ENSMUSG00000034687


Mus musculus

Features
Gene ID: ENSMUSG00000034687
  
Biological name :Fras1
  
Synonyms : Extracellular matrix protein FRAS1 / Fras1 / Q80T14
  
Possible biological names infered from orthology : Fraser extracellular matrix complex subunit 1 / Q86XX4
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: E3
Gene start: 96373955
Gene end: 96784728
  
Corresponding Affymetrix probe sets: 10523376 (MoGene1.0st)   1439019_at (Mouse Genome 430 2.0 Array)   1440765_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000043250
NCBI entrez gene - 231470     See in Manteia.
MGI - MGI:2385368
RefSeq - XM_017320847
RefSeq - NM_175473
RefSeq - XM_006534873
RefSeq - XM_017320846
RefSeq Peptide - NP_780682
swissprot - Q80T14
Ensembl - ENSMUSG00000034687
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fras1ENSDARG00000054619Danio rerio
 FRAS1ENSGALG00000010316Gallus gallus
 FRAS1ENSG00000138759Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Frem2 / Q6NVD0 / FRAS1-related extracellular matrix protein 2 / Q5SZK8*ENSMUSG0000003701624
Frem3 / FRAS1 related extracellular matrix 3 / P0C091*ENSMUSG0000004235314
Frem1 / Q684R7 / FRAS1-related extracellular matrix protein 1 / Q5H8C1* / FRAS1 related extracellular matrix 1*ENSMUSG0000005904913
BC067074 / cDNA sequence BC067074ENSMUSG0000002176310
Cspg4 / Q8VHY0 / Chondroitin sulfate proteoglycan 4 / Q6UVK1*ENSMUSG000000329119


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001007  VWFC domain
 IPR003644  Na-Ca exchanger/integrin-beta4
 IPR006212  Furin-like repeat
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR021157  Cytochrome c1, transmembrane anchor, C-terminal
 IPR032822  Extracellular matrix protein FRAS1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002009 morphogenesis of an epithelium IMP
 biological_processGO:0003338 metanephros morphogenesis IMP
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0015031 protein transport IMP
 biological_processGO:0030326 embryonic limb morphogenesis IMP
 biological_processGO:0043588 skin development IMP
 biological_processGO:0060021 roof of mouth development IMP
 cellular_componentGO:0005604 basement membrane IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000150 abnormal rib morphology "malformed bones forming the bony wall of the chest" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:50311]
Show

Allelic Composition: Emx1tm1(cre)Ito/Emx1+,Tg(HTT*97Q)IXwy/0
Genetic Background: involves: 129P2/OlaHsd * FVB

 MP:0000157 abnormal sternum morphology "malformed long flat bone of the chest; articulates with clavicle and first seven rib pairs" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:19212]
Show

Allelic Composition: Emx1tm1(cre)Ito/Emx1+,Tg(HTT*97Q)IXwy/0
Genetic Background: involves: 129P2/OlaHsd * FVB

 MP:0000520 absent kidney "missing paired organs that excrete urine" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:49471]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

Allelic Composition: Fras1tm1Chpk/Fras1tm1Chpk
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/10

Allelic Composition: Fras1tm1.2Pjsc/Fras1tm1.2Pjsc
Genetic Background: involves: C57BL/6 * FVB/N * SJL

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C3H/HeH * C57BL/6JAnu

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

Allelic Composition: Fras1b2b3323Clo/Fras1b2b3323Clo
Genetic Background: C57BL/6J-Fras1b2b3323Clo

 MP:0000522 cysts in kidney cortex "abnormal membranous sacs appearing in the renal lobules, tubules and glomeruli" [J:50844]
Show

Allelic Composition: Fras1bl/Fras1bl,Frem2my-Ucl/Frem2my-Ucl
Genetic Background: involves: 101/H * C3H/HeH * NMRI

 MP:0000523 cortical glomerulopathies "any disease of the capillary plexus in the kidney cortex" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:63229]
Show

Allelic Composition: Fras1tm1.2Pjsc/Fras1tm1.2Pjsc
Genetic Background: involves: C57BL/6 * FVB/N * SJL

 MP:0000527 abnormal kidney development "anomalous differentiation of the paired organs responsible for urine secretion" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0000528 delayed kidney development "late onset of the induction and/or differentiation of the kidney" [J:18048]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0000564 syndactyly "any degree of webbing or fusion of the digits, may involve only soft tissues or also can include bone" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

Allelic Composition: Fras1tm1Chpk/Fras1tm1Chpk
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/10

Allelic Composition: Fras1bl/Fras1bl,Frem2my-Ucl/Frem2my-Ucl
Genetic Background: involves: 101/H * C3H/HeH * NMRI

 MP:0000576 clubbed feet "congenital deformation of the feet; foot is plantarflexed, inverted and adducted" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:61295]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0001175 abnormal lung morphology "malformed organ of respiration" [J:35802]
Show

Allelic Composition: Brca2tm1Kamc/Brca2tm1Kamc
Genetic Background: involves: 129P2/OlaHsd * BALB/c

 MP:0001176 abnormal lung development "malformation or arrest of differentiation of the organs of respiration" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:54931]
Show

Allelic Composition: Brca2tm1Kamc/Brca2tm1Kamc
Genetic Background: involves: 129P2/OlaHsd * BALB/c

 MP:0001208 blistering "accumulation of fluid- filled thin walled structures under the epidermis or within the epidermis" [J:65039]
Show

Allelic Composition: Fras1tm1Chpk/Fras1tm1Chpk
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/10

Allelic Composition: Fras1tm1.2Pjsc/Fras1tm1.2Pjsc
Genetic Background: involves: C57BL/6 * FVB/N * SJL

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0001297 microphthalmia "reduced average size of the eyes" [J:18048]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0001302 eyelids open at birth "widely open eyes instead of closed at perinatal stage" [J:51966]
Show

Allelic Composition: Crygstm1Gwis/Crygstm1Gwis
Genetic Background: B6.129-Crygstm1Gwis

 MP:0001914 hemorrhage "loss of blood from the vascular compartment to the exterior or into nonvascular body space as a result of rupture or severance of the blood vessels" [Stedman s Medical Dictionary, 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Fras1tm1.2Pjsc/Fras1tm1.2Pjsc
Genetic Background: involves: C57BL/6 * FVB/N * SJL

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0002073 abnormal hair growth "absence or reduced amount of hair or abnormal onset of hair growth cycle or development" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0002092 abnormal eye morphology "abnormal development of the eye tissues resulting in morphological abnormality or abnormal structure of the visual system" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Tbc1d32b2b3260.1Clo/Tbc1d32b2b3260.1Clo
Genetic Background: C57BL/6J-Tbc1d32b2b3260.1Clo

 MP:0002110 abnormal digit morphology "abnormal development of the digits resulting in structural abnormality" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Tbc1d32b2b3260.1Clo/Tbc1d32b2b3260.1Clo
Genetic Background: C57BL/6J-Tbc1d32b2b3260.1Clo

 MP:0002639 micrognathia "abnormally reduced size of the jaws, especially of the mandible" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
Show

Allelic Composition: Fras1b2b3323Clo/Fras1b2b3323Clo
Genetic Background: C57BL/6J-Fras1b2b3323Clo

 MP:0002989 small kidney "reduced physical bulk one or both of the organs responsible for urine secretion" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0003604 single kidney 
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0003675 kidney cysts "abnormal membranous sacs in any portion of the pair of organs responsible for urine secretion" [pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0004007 abnormal lung vasculature "malformation or disorganization of the blood vessels of the lung" [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Brca2tm1Kamc/Brca2tm1Kamc
Genetic Background: involves: 129P2/OlaHsd * BALB/c

 MP:0004272 abnormal basement membrane morphology "anomaly in the structure, organization and/or placement of the extracellular supportive tissue adjacent to the basal surface of the epithelia, including the epithelium of muscle cells, fat cells and Schwann cells; it is comprised of type IV collagen, laminin, and sulfated proteoglycans and other components and consists of two layers, the basal lamina and the lamina reticularis" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MESH:A10.272.220]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

Allelic Composition: Fras1tm1Chpk/Fras1tm1Chpk
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * NMRI

 MP:0004322 abnormal sternebra morphology "any structural anomaly of one segments of the primordial sternum of the embryo; these segments fuse to form the body of the adult vertebrate sternum" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0004936 abnormal ureteric bud branching morphogenesis "partial or complete failure of the ureteric bud to repeatedly divide into lobules during development of the kidney" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0005242 cryptophthalmos "congenital anomaly in which the skin is continuous over the eyeball without any indication of the formation of eyelids" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:83745]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

Allelic Composition: Fras1tm1Chpk/Fras1tm1Chpk
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/10

Allelic Composition: Fras1bl/Fras1bl,Frem2my-Ucl/Frem2my-Ucl
Genetic Background: involves: 101/H * C3H/HeH * NMRI

 MP:0005264 glomerulosclerosis "hyaline deposits or scarring within the renal glomeruli, often occurring with renal arteriosclerosis or diabetes" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Fras1tm1.2Pjsc/Fras1tm1.2Pjsc
Genetic Background: involves: C57BL/6 * FVB/N * SJL

 MP:0005287 narrow eye opening "less than the normal distance from one eyelid to the other " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, J:71350]
Show

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0005325 abnormal glomerulus "anomalous structure of the capillary loops of the kidney that normally function as a filtration unit" [J:57971, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Fras1tm1.2Pjsc/Fras1tm1.2Pjsc
Genetic Background: involves: C57BL/6 * FVB/N * SJL

 MP:0006032 abnormal ureteric bud morphology "anomaly in the formation or development of the ureteric bud that with the metanephric mesenchyme gives rise to the kidneys " [smb:Susan M Bello, Mouse Genome Informatics Curator, J:57313:]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0006382 abnormal lung epithelium morphology "any structural anomaly of the epithelial layer of the lung" [MGI:rbabiuk "Randall Babiuk, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Fras1tm1Chpk/Fras1tm1Chpk
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * NMRI

 MP:0008854 bleb "presence of a blister-like, nearly hemispherical structure formed during embryonic development filled with air, serous fluid or blood" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C3H/HeH * C57BL/6JAnu

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0008856 fetal bleb "presence of subepidermal blister-like structures on the skin, often on the head, formed during embryonic development and usually filled with blood" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

Allelic Composition: Fras1bl/Fras1bl,Frem2my-Ucl/Frem2my-Ucl
Genetic Background: involves: 101/H * C3H/HeH * NMRI

 MP:0009655 abnormal secondary palate development "any anomaly in the formation of the part of the palate that is formed during embryonic development when palatal projections from the inner part of the maxillary processes emerge, extend and elevate into a horizontal position above the tongue" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator", PMID:16942766]
Show

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0009743 preaxial polydactyly "duplication of all or part of the first ray on one or more of the autopods" [PMID:19125433]
Show

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C3H/HeH * C57BL/6JAnu

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0009887 abnormal palatal shelf fusion at midline "any anomaly in the process in which the palatal shelves grow toward the midline and adhere along the medial edge epithelia, forming the midline epithelial seam which disappears in later stages" [PMID:16942766]
Show

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0009890 cleft secondary palate "congenital fissure of the tissues normally uniting to form the secondary palate" [PMID:16680722]
Show

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C3H/HeH * C57BL/6JAnu

Allelic Composition: Fras1bfb/Fras1bfb
Genetic Background: involves: C57BL/6JAnu

 MP:0010418 perimembraneous ventricular septal defect "abnormal communications between the two lower chambers of the heart, occurring in the membranous septum with defects in the adjacent muscular portion of the septum; it is generally located in the LV outflow tract just below the aortic valve, associated with pouches or aneurysms of the septal leaflet of the tricuspid valve, which may partially or completely close the defect; an LV-to-RA shunt may also be associated with this defect" [http://emedicine.medscape.com]
Show

Allelic Composition: Fras1b2b3323Clo/Fras1b2b3323Clo
Genetic Background: C57BL/6J-Fras1b2b3323Clo

 MP:0010977 fused right lung lobes "complete or partial fusion of the right lung lobes, indicative of defective lobar septation during embryonic lung development" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Fras1tm1Chpk/Fras1tm1Chpk
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * NMRI

 MP:0010984 abnormal metanephric mesenchyme morphology "any structural anomaly of the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, in the developing metanephros; interactions between the ureteric bud and the metanephric mesenchyme leads to the initiation of outgrowth and repetitive branching of the UB that ultimately generates the definitive renal collecting system and induces formation of renal vesicles from the mesenchyme tissue" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:19828308]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0011099 complete lethality throughout fetal growth and development "death of all organisms of a given genotype in a population between the completion of organogenesis and birth (Mus: E14 to approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Fras1tm1Chpk/Fras1tm1Chpk
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/10

 MP:0011101 partial prenatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

Allelic Composition: Fras1bl/Fras1bl,Frem2my-Ucl/Frem2my-Ucl
Genetic Background: involves: 101/H * C3H/HeH * NMRI

 MP:0011109 partial lethality throughout fetal growth and development "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between the completion of organogenesis and birth (Mus: E14 to approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Fras1tm1Chpk/Fras1tm1Chpk
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/10

 MP:0011320 abnormal glomerular capillary morphology "any structural anomaly of the small branching blood vessels in the kidney glomerulus that receives blood from the kidney afferent arterioles; these capillaries are under high pressure for filtering within the glomerulus" [MGI:csmith]
Show

Allelic Composition: Fras1tm1.2Pjsc/Fras1tm1.2Pjsc
Genetic Background: involves: C57BL/6 * FVB/N * SJL

 MP:0011339 abnormal glomerular mesangium morphology "any structural anomaly of the inner layer of the glomerulus within the basement membrane surrounding the glomerular capillaries that contain the intraglomerular mesangial cells" [MGI:csmith]
Show

Allelic Composition: Fras1tm1.2Pjsc/Fras1tm1.2Pjsc
Genetic Background: involves: C57BL/6 * FVB/N * SJL

 MP:0011364 abnormal metanephros morphology "any structural anomaly of the primordium of the permanent kidney, which develops later than and caudal to the mesonephros, from the mesonephric duct and nephrogenic cord; the metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine" [GO:0001656]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0011386 increased metanephric mesenchyme apoptosis "increase in the number of cells of the metanephric mesenchyme (MM) undergoing programmed cell death; usually due to failure of MM cells to interact with the ureteric bud (UB) tips after UB invasion" [MGI:anna]
Show

Allelic Composition: Zic3Bn/Zic3Bn
Genetic Background: BNT/LeJ

 MP:0011499 abnormal glomerular capsule space morphology "any structural anomaly of the luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries" [MGI:csmith]
Show

Allelic Composition: Fras1tm1.2Pjsc/Fras1tm1.2Pjsc
Genetic Background: involves: C57BL/6 * FVB/N * SJL

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr