ENSG00000151729


Homo sapiens

Features
Gene ID: ENSG00000151729
  
Biological name :SLC25A4
  
Synonyms : P12235 / SLC25A4 / solute carrier family 25 member 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q35.1
Gene start: 185143241
Gene end: 185150382
  
Corresponding Affymetrix probe sets: 202825_at (Human Genome U133 Plus 2.0 Array)   214821_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000281456
Ensembl peptide - ENSP00000476711
NCBI entrez gene - 291     See in Manteia.
OMIM - 103220
RefSeq - NM_001151
RefSeq Peptide - NP_001142
swissprot - A0A0S2Z3H3
swissprot - P12235
swissprot - V9GYG0
Ensembl - ENSG00000151729
  
Related genetic diseases (OMIM): 609283 - Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 2, 609283
  615418 - Mitochondrial DNA depletion syndrome 12B (cardiomyopathic type) AR, 615418
  617184 - Mitochondrial DNA depletion syndrome 12A (cardiomyopathic type) AD, 617184
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc25a4ENSDARG00000027355Danio rerio
 SLC25A4ENSGALG00000010614Gallus gallus
 P48962ENSMUSG00000031633Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P05141 / SLC25A5 / solute carrier family 25 member 5ENSG0000000502289
P12236 / SLC25A6 / solute carrier family 25 member 6ENSG0000016910088
Q9H0C2 / SLC25A31 / solute carrier family 25 member 31ENSG0000015147572


Protein motifs (from Interpro)
Interpro ID Name
 IPR002067  Mitochondrial carrier protein
 IPR002113  Adenine nucleotide translocator 1
 IPR018108  Mitochondrial substrate/solute carrier
 IPR023395  Mitochondrial carrier domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000002 mitochondrial genome maintenance TAS
 biological_processGO:0006091 generation of precursor metabolites and energy TAS
 biological_processGO:0008637 apoptotic mitochondrial changes IEA
 biological_processGO:0015853 adenine transport IEA
 biological_processGO:0015866 ADP transport IMP
 biological_processGO:0015867 ATP transport IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0046902 regulation of mitochondrial membrane permeability IBA
 biological_processGO:0050796 regulation of insulin secretion TAS
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060546 negative regulation of necroptotic process IMP
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032592 integral component of mitochondrial membrane ISS
 cellular_componentGO:0043209 myelin sheath IEA
 molecular_functionGO:0005471 ATP:ADP antiporter activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015207 adenine transmembrane transporter activity TAS
 molecular_functionGO:0022857 transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Mitochondrial protein import
Vpr-mediated induction of apoptosis by mitochondrial outer membrane permeabilization
Regulation of insulin secretion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000545 Myopia 
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 HP:0000590 External ophthalmoplegia, progressive (PEO) 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0001131 Corneal dystrophy 
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 HP:0001265 Hyporeflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001992 Organic aciduria 
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003198 Myopathy 
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 HP:0003200 Ragged-red muscle fibers "An abnormal appearance of muscle fibers observed on muscle biopsy. Ragged red fibers can be visualized with Gomori trichrome (GT) staining as irregular and intensely red subsarcolemmal zones, whereas the normal myofibrils are green. The margins of affect fibers appear red and ragged." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003546 Exercise intolerance 
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 HP:0003548 Electron microscopy shows subsarcolemmal accumulations of abnormally shaped mitochondria 
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 HP:0003577 Onset at birth 
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 HP:0003581 Onset in adulthood 
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 HP:0003676 Progressive disorder 
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 HP:0003677 Slow progression 
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 HP:0003688 Muscle biopsy shows decreased activity of cytochrome C oxidase 
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 HP:0003689 Muscle biopsy shows multiple mitochondrial DNA (mtDNA) deletions 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000213465 ARL2 / P36404 / ADP ribosylation factor like GTPase 2  / reaction / complex
 ENSG00000102931 ARL2BP / Q9Y2Y0 / ADP ribosylation factor like GTPase 2 binding protein  / complex / reaction






 

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