ENSG00000153015


Homo sapiens

Features
Gene ID: ENSG00000153015
  
Biological name :CWC27
  
Synonyms : CWC27 / CWC27 spliceosome associated protein homolog / Q6UX04
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q12.3
Gene start: 64768930
Gene end: 65018763
  
Corresponding Affymetrix probe sets: 1555495_a_at (Human Genome U133 Plus 2.0 Array)   223337_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000370460
Ensembl peptide - ENSP00000426802
NCBI entrez gene - 10283     See in Manteia.
OMIM - 617170
RefSeq - NM_005869
RefSeq - XM_017008943
RefSeq - NM_001297644
RefSeq - NM_001297645
RefSeq - NM_001318000
RefSeq - XM_011543095
RefSeq - XM_011543096
RefSeq Peptide - NP_001304929
RefSeq Peptide - NP_005860
RefSeq Peptide - NP_001284573
RefSeq Peptide - NP_001284574
swissprot - Q6UX04
swissprot - D6REK3
Ensembl - ENSG00000153015
  
Related genetic diseases (OMIM): 250410 - Retinitis pigmentosa with or without skeletal anomalies, 250410
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cwc27ENSDARG00000043727Danio rerio
 CWC27ENSGALG00000014747Gallus gallus
 Cwc27ENSMUSG00000021715Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PPIL4 / Q8WUA2 / peptidylprolyl isomerase like 4ENSG0000013101323
PPIL2 / Q13356 / peptidylprolyl isomerase like 2ENSG0000010002319
PPIL1 / Q9Y3C6 / peptidylprolyl isomerase like 1ENSG0000013716815
PPWD1 / Q96BP3 / peptidylprolyl isomerase domain and WD repeat containing 1ENSG0000011359315
PPIC / P45877 / peptidylprolyl isomerase CENSG0000016893814
PPIB / P23284 / peptidylprolyl isomerase BENSG0000016679414
PPIH / O43447 / peptidylprolyl isomerase HENSG0000017196013
PPIL6 / Q8IXY8 / peptidylprolyl isomerase like 6ENSG0000018525013
PPIL3 / Q9H2H8 / peptidylprolyl isomerase like 3ENSG0000024034412


Protein motifs (from Interpro)
Interpro ID Name
 IPR002130  Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
 IPR020892  Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site
 IPR024936  Cyclophilin-type peptidyl-prolyl cis-trans isomerase
 IPR029000  Cyclophilin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0000413 protein peptidyl-prolyl isomerization IEA
 biological_processGO:0006457 protein folding IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003755 peptidyl-prolyl cis-trans isomerase activity IEA
 molecular_functionGO:0016853 isomerase activity IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000085 Horseshoe kidney 
Show

 HP:0000107 Renal cysts 
Show

 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000400 Large ears 
Show

 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
Show

 HP:0000750 Impaired language development 
Show

 HP:0001156 Brachydactyly 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
Show

 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
Show

 HP:0001792 Nail hypoplasia "Underdeveloped `fingernails` (FMA:54327) or `toenails` (FMA:54328)." [HPO:probinson]
Show

 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0005871 Metaphyseal chondrodysplasia 
Show

 HP:0009882 Hypoplasia of the distal phalanges of the hand 
Show

 HP:0010049 Hypoplastic/short metacarpal bones 
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr