ENSG00000156150


Homo sapiens

Features
Gene ID: ENSG00000156150
  
Biological name :ALX3
  
Synonyms : ALX3 / ALX homeobox 3 / O95076
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p13.3
Gene start: 110059994
Gene end: 110070700
  
Corresponding Affymetrix probe sets: 207690_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000358807
NCBI entrez gene - 257     See in Manteia.
OMIM - 606014
RefSeq - NM_006492
RefSeq Peptide - NP_006483
swissprot - O95076
Ensembl - ENSG00000156150
  
Related genetic diseases (OMIM): 136760 - Frontonasal dysplasia 1, 136760

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ALX3ENSGALG00000025867Gallus gallus
 Alx3ENSMUSG00000014603Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ALX4 / Q9H161 / ALX homeobox 4ENSG0000005285039
ALX1 / Q15699 / ALX homeobox 1ENSG0000018031836
ARX / Q96QS3 / aristaless related homeoboxENSG0000000484827
UNCX / A6NJT0 / UNC homeoboxENSG0000016485324
O14813 / PHOX2A / paired like homeobox 2aENSG0000016546223
RAX / Q9Y2V3 / retina and anterior neural fold homeoboxENSG0000013443823
DRGX / A6NNA5 / dorsal root ganglia homeoboxENSG0000016560622
ISX / Q2M1V0 / intestine specific homeoboxENSG0000017532921
PHOX2B / Q99453 / paired like homeobox 2bENSG0000010913220
VSX1 / Q9NZR4 / visual system homeobox 1ENSG0000010098720
VSX2 / P58304 / visual system homeobox 2ENSG0000011961419
RAX2 / Q96IS3 / retina and anterior neural fold homeobox 2ENSG0000017397617


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR033211  Homeobox protein aristaless-like 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0035115 embryonic forelimb morphogenesis IEA
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000161 Median cleft lip "A type of `cleft lip` (HP:0000204) presenting as a midline (median) gap in the upper lip." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000349 Widow s peak 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000456 Bifid nasal tip "A splitting of the nasal tip. This is a rare congenital deformity due to failure of the paired nasal processes to fuse to a single midline organ during early gestation." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
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 HP:0001156 Brachydactyly 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001566 Widely-spaced upper incisors 
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0002000 Columella, short "Reduced distance from the anterior border of the naris to the subnasale." [pmid:19152422]
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 HP:0002738 Hypoplastic frontal sinuses 
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 HP:0003745 Sporadic 
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 HP:0004423 Cranium bifidum occultum 
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 HP:0005258 Pectoral muscle hypoplasia/aplasia 
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 HP:0006931 Lipoma of corpus callosum 
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 HP:0006992 Anterior basal encephalocele 
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 HP:0007541 Frontal cutaneous lipoma 
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 HP:0009099 Median cleft palate "Cleft palate of the midline of the palate." [HPO:curators]
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 HP:0009466 Radial deviation of fingers 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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