ENSG00000165462


Homo sapiens

Features
Gene ID: ENSG00000165462
  
Biological name :PHOX2A
  
Synonyms : O14813 / paired like homeobox 2a / PHOX2A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q13.4
Gene start: 72239077
Gene end: 72245664
  
Corresponding Affymetrix probe sets: 214609_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000298231
Ensembl peptide - ENSP00000444845
NCBI entrez gene - 401     See in Manteia.
OMIM - 602753
RefSeq - NM_005169
RefSeq Peptide - NP_005160
swissprot - O14813
swissprot - H0YGU5
Ensembl - ENSG00000165462
  
Related genetic diseases (OMIM): 602078 - Fibrosis of extraocular muscles, congenital, 2, 602078

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phox2aENSDARG00000007406Danio rerio
 Phox2aENSMUSG00000007946Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PHOX2B / Q99453 / paired like homeobox 2bENSG0000010913257
ARX / Q96QS3 / aristaless related homeoboxENSG0000000484831
ALX4 / Q9H161 / ALX homeobox 4ENSG0000005285029
ALX3 / O95076 / ALX homeobox 3ENSG0000015615028
UNCX / A6NJT0 / UNC homeoboxENSG0000016485327
ALX1 / Q15699 / ALX homeobox 1ENSG0000018031827
RAX / Q9Y2V3 / retina and anterior neural fold homeoboxENSG0000013443826
DRGX / A6NNA5 / dorsal root ganglia homeoboxENSG0000016560625
ISX / Q2M1V0 / intestine specific homeoboxENSG0000017532924
VSX2 / P58304 / visual system homeobox 2ENSG0000011961423
VSX1 / Q9NZR4 / visual system homeobox 1ENSG0000010098722
RAX2 / Q96IS3 / retina and anterior neural fold homeobox 2ENSG0000017397621


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003357 noradrenergic neuron differentiation NAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0021523 somatic motor neuron differentiation IEA
 biological_processGO:0021623 oculomotor nerve formation IEA
 biological_processGO:0021642 trochlear nerve formation IEA
 biological_processGO:0021703 locus ceruleus development IEA
 biological_processGO:0030901 midbrain development IEA
 biological_processGO:0043576 regulation of respiratory gaseous exchange IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0048485 sympathetic nervous system development IEA
 biological_processGO:0048486 parasympathetic nervous system development IEA
 biological_processGO:0071542 dopaminergic neuron differentiation IC
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000577 Exotropia 
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0001488 Bilateral ptosis 
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 HP:0001491 Congenital fibrosis of extraocular muscles 
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 HP:0007936 Restrictive external ophthalmoplegia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr