ENSG00000109132


Homo sapiens

Features
Gene ID: ENSG00000109132
  
Biological name :PHOX2B
  
Synonyms : paired like homeobox 2b / PHOX2B / Q99453
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: p13
Gene start: 41744082
Gene end: 41748970
  
Corresponding Affymetrix probe sets: 207009_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000226382
NCBI entrez gene - 8929     See in Manteia.
OMIM - 603851
RefSeq - NM_003924
RefSeq Peptide - NP_003915
swissprot - Q99453
Ensembl - ENSG00000109132
  
Related genetic diseases (OMIM): 209880 - Central hypoventilation syndrome, congenital, with or without Hirschsprung disease, 209880
  613013 - Neuroblastoma with Hirschsprung disease, 613013

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phox2bbENSDARG00000091029Danio rerio
 PHOX2BENSGALG00000014250Gallus gallus
 O35690ENSMUSG00000012520Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O14813 / PHOX2A / paired like homeobox 2aENSG0000016546251
ARX / Q96QS3 / aristaless related homeoboxENSG0000000484826
UNCX / A6NJT0 / UNC homeoboxENSG0000016485325
ALX4 / Q9H161 / ALX homeobox 4ENSG0000005285024
DRGX / A6NNA5 / dorsal root ganglia homeoboxENSG0000016560623
ALX1 / Q15699 / ALX homeobox 1ENSG0000018031822
RAX / Q9Y2V3 / retina and anterior neural fold homeoboxENSG0000013443822
VSX2 / P58304 / visual system homeobox 2ENSG0000011961421
ALX3 / O95076 / ALX homeobox 3ENSG0000015615021
ISX / Q2M1V0 / intestine specific homeoboxENSG0000017532920
VSX1 / Q9NZR4 / visual system homeobox 1ENSG0000010098719
RAX2 / Q96IS3 / retina and anterior neural fold homeobox 2ENSG0000017397617


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0002087 regulation of respiratory gaseous exchange by neurological system process IEA
 biological_processGO:0003357 noradrenergic neuron differentiation IEA
 biological_processGO:0003358 noradrenergic neuron development IEA
 biological_processGO:0003360 brainstem development IEP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0010001 glial cell differentiation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010971 positive regulation of G2/M transition of mitotic cell cycle ISS
 biological_processGO:0021533 cell differentiation in hindbrain IEA
 biological_processGO:0021723 medullary reticular formation development IEA
 biological_processGO:0021934 hindbrain tangential cell migration IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0035914 skeletal muscle cell differentiation IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048468 cell development IEA
 biological_processGO:0048483 autonomic nervous system development IMP
 biological_processGO:0048484 enteric nervous system development IEA
 biological_processGO:0048485 sympathetic nervous system development IEA
 biological_processGO:0048486 parasympathetic nervous system development IEA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0048894 efferent axon development in a lateral line nerve IEA
 biological_processGO:0060541 respiratory system development IEA
 biological_processGO:0061452 retrotrapezoid nucleus neuron differentiation IEA
 biological_processGO:0061549 sympathetic ganglion development IEA
 biological_processGO:0071157 negative regulation of cell cycle arrest ISS
 biological_processGO:0071542 dopaminergic neuron differentiation IEA
 biological_processGO:0071773 cellular response to BMP stimulus IEA
 biological_processGO:1901166 neural crest cell migration involved in autonomic nervous system development IEA
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000153 Abnormality of the mouth "An abnormality of the `mouth` (FMA:49184)." [HPO:probinson]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000615 Abnormality of the pupils 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001518 Low birth weight 
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 HP:0001522 Death in infancy 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001561 Polyhydramnios 
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 HP:0001562 Oligohydramnios 
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 HP:0001626 Abnormality of the cardiovascular system "Any abnormality of the heart or vasculature." [HPO:curators]
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 HP:0001657 Prolonged QT interval on EKG 
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 HP:0002019 Constipation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002271 Autonomic dysregulation 
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 HP:0002459 Dysautonomia 
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 HP:0002791 Hypoventilation 
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 HP:0003005 Ganglioneuroma 
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 HP:0003006 Neuroblastoma "Neuroblastoma is a solid tumor that originate in neural crest cells of the sympathetic nervous system. Most neuroblastomas originate in the abdomen, and most abdominal neuroblastomas originate in the adrenal gland. Neuroblastomas can also originate in the thorax, usually in the posterior mediastinum." [HPO:curators]
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 HP:0004370 Abnormality of temperature regulation 
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 HP:0004375 Neoplasia of the nervous system 
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 HP:0005957 Breathing dysregulation 
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 HP:0006747 Ganglioneuroblastoma 
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 HP:0007110 Central hypoventilation 
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 HP:0010536 Central sleep apnea "Sleep apnea resulting from a transient abolition of the central drive to the ventilatory muscles." [HPO:curators]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0011976 Elevated urinary catecholamines "An increased concentration of `catecholamine` (CHEBI:33567) in the urine." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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