ENSG00000100987


Homo sapiens

Features
Gene ID: ENSG00000100987
  
Biological name :VSX1
  
Synonyms : Q9NZR4 / visual system homeobox 1 / VSX1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: p11.21
Gene start: 25070885
Gene end: 25082365
  
Corresponding Affymetrix probe sets: 221124_s_at (Human Genome U133 Plus 2.0 Array)   222972_at (Human Genome U133 Plus 2.0 Array)   224074_at (Human Genome U133 Plus 2.0 Array)   224075_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000387720
Ensembl peptide - ENSP00000365897
Ensembl peptide - ENSP00000365899
Ensembl peptide - ENSP00000386612
Ensembl peptide - ENSP00000401690
Ensembl peptide - ENSP00000387069
NCBI entrez gene - 30813     See in Manteia.
OMIM - 605020
RefSeq - XM_017027838
RefSeq - NM_001256271
RefSeq - NM_001256272
RefSeq - NM_014588
RefSeq - NM_199425
RefSeq - XM_017027837
RefSeq Peptide - NP_055403
RefSeq Peptide - NP_955457
RefSeq Peptide - NP_001243200
RefSeq Peptide - NP_001243201
swissprot - Q9NZR4
Ensembl - ENSG00000100987
  
Related genetic diseases (OMIM): 148300 - Keratoconus 1, 148300
  614195 - ?Craniofacial anomalies and anterior segment dysgenesis syndrome, 614195

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vsx1ENSDARG00000056292Danio rerio
 VSX1ENSGALG00000037576Gallus gallus
 Vsx1ENSMUSG00000033080Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VSX2 / P58304 / visual system homeobox 2ENSG0000011961444
ALX4 / Q9H161 / ALX homeobox 4ENSG0000005285022
RAX / Q9Y2V3 / retina and anterior neural fold homeoboxENSG0000013443822
ARX / Q96QS3 / aristaless related homeoboxENSG0000000484822
UNCX / A6NJT0 / UNC homeoboxENSG0000016485322
ALX1 / Q15699 / ALX homeobox 1ENSG0000018031819
ALX3 / O95076 / ALX homeobox 3ENSG0000015615018
O14813 / PHOX2A / paired like homeobox 2aENSG0000016546217
RAX2 / Q96IS3 / retina and anterior neural fold homeobox 2ENSG0000017397616
ISX / Q2M1V0 / intestine specific homeoboxENSG0000017532916
PHOX2B / Q99453 / paired like homeobox 2bENSG0000010913216
DRGX / A6NNA5 / dorsal root ganglia homeoboxENSG0000016560616


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR023339  CVC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0042551 neuron maturation IEA
 biological_processGO:0048666 neuron development IBA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0060040 retinal bipolar neuron differentiation IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000316 Hypertelorism 
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 HP:0000356 Abnormality of the outer ear "An abnormality of the outer ear, which is also known as `pinna` (FMA:56580 ) or auricle." [HPO:probinson]
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 HP:0000483 Astigmatism 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000585 Band keratopathy "An `abnormality of the cornea` (HP:0000481) characterized by the deposition of calcium in a band across the central cornea, leading to decreased vision, foreign body sensation, and ocular irritation." [HPO:probinson]
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0001089 Iris atrophy 
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 HP:0001425 Heterogeneous 
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 HP:0007035 Anterior encephalocele 
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 HP:0007291 Posterior fossa cysts 
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 HP:0007700 Anterior chamber cleavage disorder 
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 HP:0007915 Polymorphous posterior corneal dystrophy "This corneal dystrophy affects the posterior limiting membrane of the cornea and is characterized by polymorphous plaques of calcium deposits in the deep stromal layers of the cornea, and occasionally by vesicular lesions of the endothelium and edema of the deep corneal stroma." [HPO:curators]
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 HP:0009918 Ectopia pupillae "A malposition of the pupil." [HPO:curators]
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 HP:0009926 Increased tear production "Abnormally in creased lacrimation." [HPO:curators]
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 HP:0011462 Young adult onset "Onset of disease at the age of between 15 and 40 years." [DDD:hfirth]
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 HP:0011483 Anterior synechiae of the anterior chamber "Adhesions between the iris and the cornea." [DDD:ncarter]
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 HP:0011488 Abnormality of corneal endothelium "Abnormality of the `corneal endothelium` (FMA:63882), that is, the single layer of cells on the inner surface of the cornea." [DDD:gblack]
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 HP:0025358 Uveal ectropion "Presence of iris pigment epithelium on the anterior surface of the iris." []
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 HP:0031159 Thinning of Descemet membrane "A reduction in the thickness of Descemet s membrane." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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