ENSDARG00000056292


Danio rerio

Features
Gene ID: ENSDARG00000056292
  
Biological name :vsx1
  
Synonyms : visual system homeobox 1 homolog, chx10-like / vsx1
  
Possible biological names infered from orthology : Q91V10 / Q9NZR4 / visual system homeobox 1
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 21063403
Gene end: 21066105
  
Corresponding Affymetrix probe sets: Dr.558.1.S1_at (Zebrafish Array)   NM_131333_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000095102
Ensembl peptide - ENSDARP00000073224
NCBI entrez gene - 30598     See in Manteia.
RefSeq - XM_005158663
RefSeq - NM_131333
RefSeq Peptide - NP_571408
swissprot - F1QTW3
swissprot - F1QBH3
ZFIN ID - ZDB-GENE-990415-205
Ensembl - ENSDARG00000056292
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VSX1ENSGALG00000037576Gallus gallus
 VSX1ENSG00000100987Homo sapiens
 Vsx1ENSMUSG00000033080Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vsx2 / visual system homeobox 2ENSDARG0000000557442
rx2 / retinal homeobox gene 2 / RAX2* / Q96IS3* / retina and anterior neural fold homeobox 2*ENSDARG0000004032120
arxa / O42115 / aristaless related homeobox a / ARX* / Q96QS3* / O35085* / Homeobox protein ARX * / aristaless related homeobox*ENSDARG0000005801120
uncx4.1 / Unc4.1 homeobox (C. elegans) / UNCX* / A6NJT0* / O08934* / UNC homeobox*ENSDARG0000003776020
rx1 / retinal homeobox gene 1 / RAX2* / Q96IS3* / retina and anterior neural fold homeobox 2*ENSDARG0000007168420
alx4a / ALX homeobox 4a / ALX4* / O35137* / Q9H161* / ALX homeobox 4* / Homeobox protein aristaless-like 4 *ENSDARG0000008833219
rx3 / retinal homeobox gene 3 / RAX* / Q9Y2V3* / O35602* / Retinal homeobox protein Rx * / retina and anterior neural fold homeobox*ENSDARG0000005289319
arxb / aristaless related homeobox b / ARX* / Q96QS3* / aristaless related homeobox*ENSDARG0000010152318
alx1 / Q1LVQ7 / ALX homeobox 1 / Q15699* / Q8C8B0* / ALX homeobox protein 1 *ENSDARG0000006282418
alx4b / ALX homeobox 4b / ALX4* / O35137* / Q9H161* / ALX homeobox 4* / Homeobox protein aristaless-like 4 *ENSDARG0000007444218
phox2a / paired-like homeobox 2a / O14813* / Q62066* / Paired mesoderm homeobox protein 2A *ENSDARG0000000740617
phox2bb / paired-like homeobox 2bb / Q99453* / O35690* / PHOX2B* / paired like homeobox 2b* / Paired mesoderm homeobox protein 2B *ENSDARG0000009102917
uncx / UNC homeobox / A6NJT0* / O08934*ENSDARG0000010297616
drgx / dorsal root ganglia homeobox / A6NNA5* / Prrxl1* / Q8BYH0* / paired related homeobox protein-like 1*ENSDARG0000006932914
si:dkey-43p13.5ENSDARG0000010419913
phox2ba / paired-like homeobox 2baENSDARG0000007533013


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR023339  CVC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
Show

 ZFA:0000037 anatomical structure anatomical structure dorso-medial region disorganized , abnormal
Show

 ZFA:0000060 prechordal plate prechordal plate mesodermal cell migration process quality , abnormal
Show

 ZFA:0000075 spinal cord spinal cord bifurcated , abnormal
Show

 ZFA:0000107 eye eye morphology , abnormal
Show

 ZFA:0000135 notochord notochord morphology , abnormal
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 ZFA:0000155 somite somite absent , abnormal
Show

 ZFA:0001094 whole organism whole organism wholly dorsalized , abnormal
whole organism decreased life span , abnormal
Show

 ZFA:0001261 ventricular system ventricular system morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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