ENSDARG00000074442


Danio rerio

Features
Gene ID: ENSDARG00000074442
  
Biological name :alx4b
  
Synonyms : alx4b / ALX homeobox 4b
  
Possible biological names infered from orthology : ALX4 / ALX homeobox 4 / Homeobox protein aristaless-like 4 / O35137 / Q9H161
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 38321039
Gene end: 38364462
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126209
Ensembl peptide - ENSDARP00000152561
Ensembl peptide - ENSDARP00000124718
NCBI entrez gene - 497424     See in Manteia.
RefSeq - NM_001310078
RefSeq Peptide - NP_001297007
swissprot - A0A0A0MPW6
swissprot - I3ITE6
ZFIN ID - ZDB-GENE-050208-140
Ensembl - ENSDARG00000074442
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ALX4ENSGALG00000032584Gallus gallus
 ALX4ENSG00000052850Homo sapiens
 Alx4ENSMUSG00000040310Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
alx4a / ALX homeobox 4a / ALX4* / O35137* / Q9H161* / ALX homeobox 4* / Homeobox protein aristaless-like 4 *ENSDARG0000008833278
alx1 / Q1LVQ7 / ALX homeobox 1 / Q15699* / Q8C8B0* / ALX homeobox protein 1 *ENSDARG0000006282433
arxa / O42115 / aristaless related homeobox a / ARX* / Q96QS3* / O35085* / Homeobox protein ARX * / aristaless related homeobox*ENSDARG0000005801128
arxb / aristaless related homeobox b / ARX* / Q96QS3* / aristaless related homeobox*ENSDARG0000010152325
vsx2 / visual system homeobox 2ENSDARG0000000557422
rx1 / retinal homeobox gene 1 / RAX2* / Q96IS3* / retina and anterior neural fold homeobox 2*ENSDARG0000007168421
rx3 / retinal homeobox gene 3 / RAX* / Q9Y2V3* / O35602* / Retinal homeobox protein Rx * / retina and anterior neural fold homeobox*ENSDARG0000005289321
rx2 / retinal homeobox gene 2 / RAX2* / Q96IS3* / retina and anterior neural fold homeobox 2*ENSDARG0000004032120
drgx / dorsal root ganglia homeobox / A6NNA5* / Prrxl1* / Q8BYH0* / paired related homeobox protein-like 1*ENSDARG0000006932920
phox2a / paired-like homeobox 2a / O14813* / Q62066* / Paired mesoderm homeobox protein 2A *ENSDARG0000000740620
uncx / UNC homeobox / A6NJT0* / O08934*ENSDARG0000010297620
uncx4.1 / Unc4.1 homeobox (C. elegans) / UNCX* / A6NJT0* / O08934* / UNC homeobox*ENSDARG0000003776019
phox2bb / paired-like homeobox 2bb / Q99453* / O35690* / PHOX2B* / paired like homeobox 2b* / Paired mesoderm homeobox protein 2B *ENSDARG0000009102919
vsx1 / visual system homeobox 1 homolog, chx10-like / Q91V10* / Q9NZR4* / visual system homeobox 1*ENSDARG0000005629217
si:dkey-43p13.5ENSDARG0000010419915
phox2ba / paired-like homeobox 2baENSDARG0000007533014


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR033203  Homeobox protein aristaless-like 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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