ENSG00000173976


Homo sapiens

Features
Gene ID: ENSG00000173976
  
Biological name :RAX2
  
Synonyms : Q96IS3 / RAX2 / retina and anterior neural fold homeobox 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.3
Gene start: 3769089
Gene end: 3772221
  
Corresponding Affymetrix probe sets: 1552311_a_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000450456
Ensembl peptide - ENSP00000450687
NCBI entrez gene - 84839     See in Manteia.
OMIM - 610362
RefSeq - NM_001319074
RefSeq - NM_032753
RefSeq Peptide - NP_001306003
RefSeq Peptide - NP_116142
swissprot - Q96IS3
Ensembl - ENSG00000173976
  
Related genetic diseases (OMIM): 610381 - Cone-rod dystrophy 11, 610381
  613757 - ?Macular degeneration, age-related, 6, 613757

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rx1ENSDARG00000071684Danio rerio
 rx2ENSDARG00000040321Danio rerio
 RAX2ENSGALG00000013431Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAX / Q9Y2V3 / retina and anterior neural fold homeoboxENSG0000013443858
ARX / Q96QS3 / aristaless related homeoboxENSG0000000484837
VSX2 / P58304 / visual system homeobox 2ENSG0000011961434
ALX4 / Q9H161 / ALX homeobox 4ENSG0000005285033
ALX3 / O95076 / ALX homeobox 3ENSG0000015615033
VSX1 / Q9NZR4 / visual system homeobox 1ENSG0000010098732
UNCX / A6NJT0 / UNC homeoboxENSG0000016485332
O14813 / PHOX2A / paired like homeobox 2aENSG0000016546232
ISX / Q2M1V0 / intestine specific homeoboxENSG0000017532930
ALX1 / Q15699 / ALX homeobox 1ENSG0000018031830
DRGX / A6NNA5 / dorsal root ganglia homeoboxENSG0000016560629
PHOX2B / Q99453 / paired like homeobox 2bENSG0000010913228


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR036934  Retina and anterior neural fold homeobox protein 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000548 Cone-rod dystrophy 
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 HP:0000551 Abnormal color vision 
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 HP:0000608 Macular degeneration 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001265 Hyporeflexia 
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 HP:0001761 Pes cavus 
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 HP:0001765 Hammer toes 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0007269 Spinal muscular atrophy "Muscular weakness and atrophy related to loss of the motor neurons of the spinal cord and brainstem." [HPO:curators]
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 HP:0007401 Primary noninflammatory macular atrophy 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007924 Slow decrease in visual acuity 
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0011504 Bull s eye maculopathy "Progressive maculopathy characterized by concentric regions of hyper- and hypo-pigmentation." [DDD:gblack]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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