ENSG00000163380


Homo sapiens

Features
Gene ID: ENSG00000163380
  
Biological name :LMOD3
  
Synonyms : leiomodin 3 / LMOD3 / Q0VAK6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p14.1
Gene start: 69106872
Gene end: 69123032
  
Corresponding Affymetrix probe sets: 1555567_s_at (Human Genome U133 Plus 2.0 Array)   1564469_at (Human Genome U133 Plus 2.0 Array)   243346_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000414670
Ensembl peptide - ENSP00000417210
Ensembl peptide - ENSP00000418645
NCBI entrez gene - 56203     See in Manteia.
OMIM - 616112
RefSeq - NM_001304418
RefSeq - NM_198271
RefSeq Peptide - NP_001291347
RefSeq Peptide - NP_938012
swissprot - Q0VAK6
Ensembl - ENSG00000163380
  
Related genetic diseases (OMIM): 616165 - Nemaline myopathy 10, 616165
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmod3ENSDARG00000062662Danio rerio
 LMOD3ENSGALG00000018946Gallus gallus
 Lmod3ENSMUSG00000044086Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LMOD2 / Q6P5Q4 / leiomodin 2ENSG0000017080736
LMOD1 / P29536 / leiomodin 1ENSG0000016343134
TMOD2 / Q9NZR1 / tropomodulin 2ENSG0000012887223
TMOD1 / P28289 / tropomodulin 1ENSG0000013684222
TMOD4 / Q9NZQ9 / tropomodulin 4ENSG0000016315722
TMOD3 / Q9NYL9 / tropomodulin 3ENSG0000013859421


Protein motifs (from Interpro)
Interpro ID Name
 IPR004934  Tropomodulin
 IPR030131  Leiomodin-3
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0006941 striated muscle contraction IMP
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0030239 myofibril assembly IBA
 biological_processGO:0030240 skeletal muscle thin filament assembly IMP
 biological_processGO:0045010 actin nucleation IMP
 biological_processGO:0048741 skeletal muscle fiber development ISS
 biological_processGO:0048743 positive regulation of skeletal muscle fiber development IMP
 biological_processGO:0051694 pointed-end actin filament capping IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005865 striated muscle thin filament IDA
 cellular_componentGO:0031430 M band IEA
 cellular_componentGO:0031672 A band IEA
 molecular_functionGO:0003785 actin monomer binding IMP
 molecular_functionGO:0005523 tropomyosin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001561 Polyhydramnios 
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 HP:0001622 Premature birth 
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0006829 Severe muscular hypotonia "A severe degree of muscular hypotonia characterized by markedly reduced muscle tone." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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