ENSGALG00000018946


Gallus gallus

Features
Gene ID: ENSGALG00000018946
  
Biological name :LMOD3
  
Synonyms : leiomodin 3 / LMOD3
  
Possible biological names infered from orthology : E9QA62 / Q0VAK6
  
Species: Gallus gallus
  
Chr. number: 12
Strand: -1
Band:
Gene start: 15361702
Gene end: 15364738
  
Corresponding Affymetrix probe sets: Gga.11391.1.S1_at (Chicken Array)   Gga.11391.1.S1_a_at (Chicken Array)   Gga.11391.2.A1_a_at (Chicken Array)   Gga.11391.2.S1_s_at (Chicken Array)   GgaAffx.24471.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000029247
NCBI entrez gene - 426075     See in Manteia.
RefSeq - XM_015293248
swissprot - E1C6A3
Ensembl - ENSGALG00000018946
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmod3ENSDARG00000062662Danio rerio
 LMOD3ENSG00000163380Homo sapiens
 Lmod3ENSMUSG00000044086Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LMOD2 / E1BTG2 / Leiomodin-2 / Q3UHZ5* / Q6P5Q4*ENSGALG0000000880534
LMOD1 / leiomodin 1 / P29536*ENSGALG0000002872130
TMOD1 / tropomodulin-1 / P28289* / P49813*ENSGALG0000000212523
TMOD3 / tropomodulin 3 / Q9JHJ0* / Q9NYL9*ENSGALG0000000471021
TMOD2 / tropomodulin 2 / Q9JKK7* / Q9NZR1*ENSGALG0000000474019
TMOD4 / tropomodulin-4 / Q9JLH8* / Q9NZQ9*ENSGALG0000003024719


Protein motifs (from Interpro)
Interpro ID Name
 IPR003124  WH2 domain
 IPR004934  Tropomodulin
 IPR030131  Leiomodin-3
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0006941 striated muscle contraction IEA
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0030239 myofibril assembly IBA
 biological_processGO:0030240 skeletal muscle thin filament assembly IEA
 biological_processGO:0045010 actin nucleation IEA
 biological_processGO:0048741 skeletal muscle fiber development IEA
 biological_processGO:0048743 positive regulation of skeletal muscle fiber development IEA
 biological_processGO:0051694 pointed-end actin filament capping IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005865 striated muscle thin filament IEA
 cellular_componentGO:0031430 M band IEA
 cellular_componentGO:0031672 A band IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0003785 actin monomer binding IEA
 molecular_functionGO:0005523 tropomyosin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr