ENSDARG00000062662


Danio rerio

Features
Gene ID: ENSDARG00000062662
  
Biological name :lmod3
  
Synonyms : E7F7X0 / leiomodin 3 (fetal) / lmod3
  
Possible biological names infered from orthology : E9QA62 / leiomodin 3 / Q0VAK6
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 13814978
Gene end: 13822642
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000085297
NCBI entrez gene - 100149390     See in Manteia.
swissprot - E7F7X0
ZFIN ID - ZDB-GENE-090313-353
Ensembl - ENSDARG00000062662
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LMOD3ENSGALG00000018946Gallus gallus
 LMOD3ENSG00000163380Homo sapiens
 Lmod3ENSMUSG00000044086Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmod2b / leiomodin 2 (cardiac) b / LMOD2* / Q3UHZ5* / Q6P5Q4* / leiomodin 2*ENSDARG0000004586426
lmod1a / leiomodin 1a (smooth muscle) / LMOD1* / P29536* / leiomodin 1*ENSDARG0000005611124
lmod1b / leiomodin 1b (smooth muscle) / LMOD1* / P29536* / leiomodin 1*ENSDARG0000007726121
lmod2a / leiomodin 2 (cardiac) a / LMOD2* / Q3UHZ5* / Q6P5Q4* / leiomodin 2*ENSDARG0000004563421
tmod2 / tropomodulin 2 / TMOD3* / Q9NZR1* / Q9JHJ0* / Q9JKK7* / Q9NYL9* / tropomodulin 3*ENSDARG0000000257120
tmod1 / tropomodulin 1 / P28289* / P49813*ENSDARG0000007831819
tmod4 / tropomodulin 4 (muscle) / Q9JLH8* / Q9NZQ9* / tropomodulin 4*ENSDARG0000002089018


Protein motifs (from Interpro)
Interpro ID Name
 IPR004934  Tropomodulin
 IPR030131  Leiomodin-3
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IMP
 biological_processGO:0030240 skeletal muscle thin filament assembly IMP
 biological_processGO:0048741 skeletal muscle fiber development ISS
 biological_processGO:0051694 pointed-end actin filament capping IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005865 striated muscle thin filament IBA
 cellular_componentGO:0031430 M band IEA
 cellular_componentGO:0031672 A band IEA
 molecular_functionGO:0003785 actin monomer binding IEA
 molecular_functionGO:0005523 tropomyosin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000473 trunk musculature trunk musculature decreased functionality , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism refractivity , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
Show

 ZFA:0009114 muscle cell muscle cell inclusion body increased amount , abnormal
muscle cell M band morphology , abnormal
muscle cell skeletal muscle myofibril increased distance muscle cell skeletal muscle myofibril, abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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