ENSDARG00000077261


Danio rerio

Features
Gene ID: ENSDARG00000077261
  
Biological name :lmod1b
  
Synonyms : leiomodin 1b (smooth muscle) / lmod1b
  
Possible biological names infered from orthology : leiomodin 1 / LMOD1 / P29536
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 24889170
Gene end: 24894907
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000104330
NCBI entrez gene - 795335     See in Manteia.
swissprot - E7F062
ZFIN ID - ZDB-GENE-141215-22
Ensembl - ENSDARG00000077261
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LMOD1ENSGALG00000028721Gallus gallus
 LMOD1ENSG00000163431Homo sapiens
 Lmod1ENSMUSG00000048096Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmod1a / leiomodin 1a (smooth muscle) / LMOD1* / P29536* / leiomodin 1*ENSDARG0000005611131
lmod2b / leiomodin 2 (cardiac) b / LMOD2* / Q3UHZ5* / Q6P5Q4* / leiomodin 2*ENSDARG0000004586425
lmod3 / E7F7X0 / leiomodin 3 (fetal) / Q0VAK6* / E9QA62* / leiomodin 3*ENSDARG0000006266221
lmod2a / leiomodin 2 (cardiac) a / LMOD2* / Q3UHZ5* / Q6P5Q4* / leiomodin 2*ENSDARG0000004563417
tmod1 / tropomodulin 1 / P28289* / P49813*ENSDARG0000007831814
tmod4 / tropomodulin 4 (muscle) / Q9JLH8* / Q9NZQ9* / tropomodulin 4*ENSDARG0000002089013
tmod2 / tropomodulin 2 / TMOD3* / Q9NZR1* / Q9JHJ0* / Q9JKK7* / Q9NYL9* / tropomodulin 3*ENSDARG0000000257113


Protein motifs (from Interpro)
Interpro ID Name
 IPR003124  WH2 domain
 IPR004934  Tropomodulin
 IPR030136  Leiomodin-1
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0030239 myofibril assembly IBA
 biological_processGO:0051694 pointed-end actin filament capping IEA
 cellular_componentGO:0005865 striated muscle thin filament IBA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005523 tropomyosin binding IBA


Pathways (from Reactome)
Pathway description
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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