ENSDARG00000056111


Danio rerio

Features
Gene ID: ENSDARG00000056111
  
Biological name :lmod1a
  
Synonyms : leiomodin 1a (smooth muscle) / lmod1a
  
Possible biological names infered from orthology : leiomodin 1 / LMOD1 / P29536
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 28297066
Gene end: 28304534
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000073006
NCBI entrez gene - 101887017     See in Manteia.
swissprot - F1Q5S5
ZFIN ID - ZDB-GENE-081104-348
Ensembl - ENSDARG00000056111
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LMOD1ENSGALG00000028721Gallus gallus
 LMOD1ENSG00000163431Homo sapiens
 Lmod1ENSMUSG00000048096Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmod1b / leiomodin 1b (smooth muscle) / LMOD1* / P29536* / leiomodin 1*ENSDARG0000007726132
lmod2b / leiomodin 2 (cardiac) b / LMOD2* / Q3UHZ5* / Q6P5Q4* / leiomodin 2*ENSDARG0000004586429
lmod3 / E7F7X0 / leiomodin 3 (fetal) / Q0VAK6* / E9QA62* / leiomodin 3*ENSDARG0000006266225
lmod2a / leiomodin 2 (cardiac) a / LMOD2* / Q3UHZ5* / Q6P5Q4* / leiomodin 2*ENSDARG0000004563420
tmod1 / tropomodulin 1 / P28289* / P49813*ENSDARG0000007831818
tmod2 / tropomodulin 2 / TMOD3* / Q9NZR1* / Q9JHJ0* / Q9JKK7* / Q9NYL9* / tropomodulin 3*ENSDARG0000000257117
tmod4 / tropomodulin 4 (muscle) / Q9JLH8* / Q9NZQ9* / tropomodulin 4*ENSDARG0000002089017


Protein motifs (from Interpro)
Interpro ID Name
 IPR004934  Tropomodulin
 IPR030136  Leiomodin-1
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IEA
 biological_processGO:0051694 pointed-end actin filament capping IEA
 molecular_functionGO:0005523 tropomyosin binding IEA


Pathways (from Reactome)
Pathway description
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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