ENSMUSG00000048096


Mus musculus

Features
Gene ID: ENSMUSG00000048096
  
Biological name :Lmod1
  
Synonyms : leiomodin 1 / Lmod1
  
Possible biological names infered from orthology : P29536
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: E4
Gene start: 135324807
Gene end: 135368065
  
Corresponding Affymetrix probe sets: 10350123 (MoGene1.0st)   1427485_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000061597
NCBI entrez gene - 93689     See in Manteia.
MGI - MGI:2135671
RefSeq - NM_053106
RefSeq Peptide - NP_444336
swissprot - F8VPR1
Ensembl - ENSMUSG00000048096
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmod1aENSDARG00000056111Danio rerio
 lmod1bENSDARG00000077261Danio rerio
 LMOD1ENSGALG00000028721Gallus gallus
 LMOD1ENSG00000163431Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Lmod2 / Q3UHZ5 / Leiomodin-2 / Q6P5Q4*ENSMUSG0000002968337
Lmod3 / E9QA62 / Leiomodin-3 / Q0VAK6*ENSMUSG0000004408632
Tmod2 / Q9JKK7 / tropomodulin 2 / Q9NZR1*ENSMUSG0000003218622
Tmod1 / P49813 / Tropomodulin-1 / P28289*ENSMUSG0000002832822
Tmod3 / Q9JHJ0 / tropomodulin 3 / Q9NYL9*ENSMUSG0000005858721
Tmod4 / Q9JLH8 / tropomodulin 4 / Q9NZQ9*ENSMUSG0000000562819


Protein motifs (from Interpro)
Interpro ID Name
 IPR003124  WH2 domain
 IPR004934  Tropomodulin
 IPR030136  Leiomodin-1
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IEA
 biological_processGO:0030838 positive regulation of actin filament polymerization IEA
 biological_processGO:0045010 actin nucleation IEA
 biological_processGO:0051694 pointed-end actin filament capping IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005884 actin filament IEA
 cellular_componentGO:0030016 myofibril IEA
 cellular_componentGO:0030017 sarcomere IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005523 tropomyosin binding IEA


Pathways (from Reactome)
Pathway description
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr