ENSG00000163913


Homo sapiens

Features
Gene ID: ENSG00000163913
  
Biological name :IFT122
  
Synonyms : IFT122 / intraflagellar transport 122 / Q9HBG6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q21.3
Gene start: 129440036
Gene end: 129520507
  
Corresponding Affymetrix probe sets: 1563794_s_at (Human Genome U133 Plus 2.0 Array)   216678_at (Human Genome U133 Plus 2.0 Array)   220744_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000425540
Ensembl peptide - ENSP00000425536
Ensembl peptide - ENSP00000427027
Ensembl peptide - ENSP00000427515
Ensembl peptide - ENSP00000427061
Ensembl peptide - ENSP00000296266
Ensembl peptide - ENSP00000323973
Ensembl peptide - ENSP00000324005
Ensembl peptide - ENSP00000324165
Ensembl peptide - ENSP00000401569
Ensembl peptide - ENSP00000410946
Ensembl peptide - ENSP00000421140
Ensembl peptide - ENSP00000421953
Ensembl peptide - ENSP00000422179
Ensembl peptide - ENSP00000422237
Ensembl peptide - ENSP00000423288
Ensembl peptide - ENSP00000423902
Ensembl peptide - ENSP00000423921
Ensembl peptide - ENSP00000424206
Ensembl peptide - ENSP00000424727
NCBI entrez gene - 55764     See in Manteia.
OMIM - 606045
RefSeq - XM_017006838
RefSeq - XM_017006818
RefSeq - XM_017006819
RefSeq - XM_017006820
RefSeq - XM_017006821
RefSeq - XM_017006822
RefSeq - XM_017006823
RefSeq - XM_017006824
RefSeq - XM_017006825
RefSeq - XM_017006826
RefSeq - XM_017006827
RefSeq - XM_017006828
RefSeq - XM_017006829
RefSeq - XM_017006830
RefSeq - XM_017006831
RefSeq - XM_017006832
RefSeq - XM_017006833
RefSeq - XM_017006834
RefSeq - XM_017006835
RefSeq - XM_017006836
RefSeq - XM_017006837
RefSeq - NM_001280541
RefSeq - NM_001280545
RefSeq - NM_001280546
RefSeq - NM_018262
RefSeq - NM_052985
RefSeq - NM_052989
RefSeq - NM_052990
RefSeq - XM_005247609
RefSeq - XM_006713689
RefSeq - XM_006713691
RefSeq - XM_006713692
RefSeq - XM_006713695
RefSeq - XM_011512972
RefSeq - XM_017006817
RefSeq Peptide - NP_443711
RefSeq Peptide - NP_443715
RefSeq Peptide - NP_443716
RefSeq Peptide - NP_001267475
RefSeq Peptide - NP_060732
RefSeq Peptide - NP_001267470
RefSeq Peptide - NP_001267474
swissprot - H0Y9Q2
swissprot - H0Y9Y9
swissprot - H0YAG6
swissprot - D6RIB5
swissprot - Q9HBG6
swissprot - D6R8Z2
swissprot - H0YAG9
swissprot - D6RAF7
swissprot - H0Y8I2
swissprot - H0Y978
swissprot - H0Y9E1
swissprot - H0Y9E5
swissprot - H0Y9I6
Ensembl - ENSG00000163913
  
Related genetic diseases (OMIM): 218330 - Cranioectodermal dysplasia 1, 218330
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IFT122ENSGALG00000008452Gallus gallus
 Ift122ENSMUSG00000030323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR011044  Quinoprotein amine dehydrogenase, beta chain-like
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001843 neural tube closure ISS
 biological_processGO:0007227 signal transduction downstream of smoothened IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0010172 embryonic body morphogenesis ISS
 biological_processGO:0021914 negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0035050 embryonic heart tube development ISS
 biological_processGO:0035115 embryonic forelimb morphogenesis IEA
 biological_processGO:0035720 intraciliary anterograde transport IEA
 biological_processGO:0035721 intraciliary retrograde transport ISS
 biological_processGO:0035735 intraciliary transport involved in cilium assembly TAS
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0045879 negative regulation of smoothened signaling pathway ISS
 biological_processGO:0048593 camera-type eye morphogenesis ISS
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IEA
 biological_processGO:0060173 limb development ISS
 biological_processGO:0060271 cilium assembly IBA
 biological_processGO:0060830 ciliary receptor clustering involved in smoothened signaling pathway IEA
 biological_processGO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterning IEA
 biological_processGO:0060971 embryonic heart tube left/right pattern formation IEA
 biological_processGO:0061512 protein localization to cilium IMP
 biological_processGO:0072594 establishment of protein localization to organelle IEA
 biological_processGO:1905515 non-motile cilium assembly IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium IBA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0030991 intraciliary transport particle A IDA
 cellular_componentGO:0032391 photoreceptor connecting cilium ISS
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097542 ciliary tip TAS
 cellular_componentGO:0097546 ciliary base IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000232 Everted lower lip 
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 HP:0000268 Dolichocephaly 
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 HP:0000269 Prominent occiput 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000556 Retinal dystrophy 
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 HP:0000601 Hypotelorism 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000674 Anodontia "The congenital absence of all teeth." [HPO:curators]
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 HP:0000679 Taurodontia 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000687 Widely spaced teeth 
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 HP:0000691 Microdontia 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000940 Abnormality of the diaphyses 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0000968 Ectodermal dysplasia 
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 HP:0001156 Brachydactyly 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001388 Joint laxity 
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 HP:0001395 Hepatic fibrosis 
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 HP:0001399 Hepatic failure 
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 HP:0001407 Hepatic cysts 
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 HP:0001538 Protuberant abdomen "A thrusting or bulging out of the abdomen." [HPO:curators]
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 HP:0001647 Bicuspid aortic valve "The presence of a bicuspid `aortic valve` (FMA:7236)." [HPO:probinson]
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 HP:0001799 Short nails 
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 HP:0001816 Thin nails 
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 HP:0001831 Brachydactyly (feet) 
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 HP:0001837 Broad toes 
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 HP:0001970 Tubulointerstitial nephritis 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002213 Fine hair 
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 HP:0002217 Slow-growing hair 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002901 Hypocalcemia "A level of blood calcium that is lower than normal." [HPO:curators]
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 HP:0003038 Fibular hypoplasia "Underdevelopment of the fibula." [HPO:curators]
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 HP:0003071 Flattened epiphyses 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004298 Abnormality of the abdominal wall "The presence of any abnormality affecting the abdominal wall." [HPO:curators]
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 HP:0004442 Sagittal craniosynostosis 
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 HP:0005567 Renal magnesium wasting 
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 HP:0005692 Joint hyperflexibility 
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 HP:0005792 Humeral hypoplasia 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0006563 Malformation of the hepatic ductal plate 
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 HP:0008070 Sparse hair 
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 HP:0008388 Abnormality of the toenails 
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 HP:0008499 High-grade hypermetropia 
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 HP:0008905 Rhizomelic short stature 
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 HP:0009466 Radial deviation of fingers 
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 HP:0009880 Broad distal phalanges of fingers and toes 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0012622 Chronic kidney disease "Functional anomaly of the kidney persisting for at least three months." [Eurenomics:ewuehl]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0030799 Scaphocephaly "Scaphocephaly is a subtype of dolichocephaly where the anterior and posterior aspects of the cranial vault are pointed (boat-shaped). Scaphocephaly is caused by a precocious fusion of sagittal suture without other associated synostosis." [HPO:probinson, PMID:16156241, PMID:23960302]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000123607 Q7Z4L5 / TTC21B / tetratricopeptide repeat domain 21B  / complex
 ENSG00000118965 WDR35 / Q9P2L0 / WD repeat domain 35  / complex
 ENSG00000157796 WDR19 / Q8NEZ3 / WD repeat domain 19  / complex
 ENSG00000143147 GPR161 / Q8N6U8 / G protein-coupled receptor 161  / complex / reaction
 ENSG00000187535 IFT140 / Q96RY7 / intraflagellar transport 140  / complex
 ENSG00000078246 TULP3 / O75386 / tubby like protein 3  / complex / reaction






 

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