ENSG00000187535


Homo sapiens

Features
Gene ID: ENSG00000187535
  
Biological name :IFT140
  
Synonyms : IFT140 / intraflagellar transport 140 / Q96RY7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: p13.3
Gene start: 1510427
Gene end: 1612110
  
Corresponding Affymetrix probe sets: 204792_s_at (Human Genome U133 Plus 2.0 Array)   232844_at (Human Genome U133 Plus 2.0 Array)   244585_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000458439
Ensembl peptide - ENSP00000454781
Ensembl peptide - ENSP00000457092
Ensembl peptide - ENSP00000354895
Ensembl peptide - ENSP00000380562
Ensembl peptide - ENSP00000406012
NCBI entrez gene - 9742     See in Manteia.
OMIM - 614620
RefSeq - XM_017023911
RefSeq - XM_006720990
RefSeq - XM_006720991
RefSeq - XM_006720992
RefSeq - XM_011522766
RefSeq - XM_011522767
RefSeq - XM_017023910
RefSeq - NM_014714
RefSeq Peptide - NP_055529
swissprot - H3BTA5
swissprot - I3L0Y8
swissprot - J3KPW0
swissprot - H3BNC5
swissprot - Q96RY7
Ensembl - ENSG00000187535
  
Related genetic diseases (OMIM): 266920 - Short-rib thoracic dysplasia 9 with or without polydactyly, 266920
  617781 - Retinitis pigmentosa 80, 617781
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ift140ENSDARG00000031886Danio rerio
 IFT140ENSGALG00000009318Gallus gallus
 E9PY46ENSMUSG00000024169Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR024977  Anaphase-promoting complex subunit 4, WD40 domain
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0021532 neural tube patterning IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0031076 embryonic camera-type eye development IEA
 biological_processGO:0035108 limb morphogenesis IEA
 biological_processGO:0035721 intraciliary retrograde transport IEA
 biological_processGO:0035735 intraciliary transport involved in cilium assembly TAS
 biological_processGO:0035845 photoreceptor cell outer segment organization IEA
 biological_processGO:0042073 intraciliary transport IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048705 skeletal system morphogenesis IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0061512 protein localization to cilium IMP
 biological_processGO:0072001 renal system development IMP
 biological_processGO:1902017 regulation of cilium assembly IMP
 biological_processGO:1905515 non-motile cilium assembly IEA
 biological_processGO:1990403 embryonic brain development IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0005930 axoneme IEA
 cellular_componentGO:0030991 intraciliary transport particle A IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097542 ciliary tip TAS
 cellular_componentGO:0097730 non-motile cilium IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000083 Renal failure 
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 HP:0000090 Nephronophthisis 
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 HP:0000107 Renal cysts 
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 HP:0000110 Renal dysplasia 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000572 Visual loss 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000766 Abnormality of the sternum 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000987 Scarring 
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 HP:0001141 Severe visual impairment 
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 HP:0001156 Brachydactyly 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001392 Abnormality of the liver 
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 HP:0001395 Hepatic fibrosis 
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 HP:0001396 Cholestasis 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
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 HP:0001903 Anemia 
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 HP:0002084 Encephalocele 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002269 Neuronal migration disorder 
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 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002983 Micromelia 
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 HP:0003090 Small capital femoral epiphyses 
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 HP:0003593 Early onset 
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 HP:0003774 End stage renal disease 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0006703 Aplasia/Hypoplasia of the lungs 
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 HP:0006817 Cerebellar vermis aplasia/hypoplasia "Absence or underdevelopment of the cerebellar vermis." [HPO:curators]
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0010579 Cone-shaped epiphyses 
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 HP:0012795 Abnormality of the optic disc "A morphological abnormality of the optic disc, i.e., of the portion of the optic nerve clinically visible on fundoscopic examination." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100864 Hypoplasia of the femoral neck 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000123607 Q7Z4L5 / TTC21B / tetratricopeptide repeat domain 21B  / complex
 ENSG00000118965 WDR35 / Q9P2L0 / WD repeat domain 35  / complex
 ENSG00000157796 WDR19 / Q8NEZ3 / WD repeat domain 19  / complex
 ENSG00000143147 GPR161 / Q8N6U8 / G protein-coupled receptor 161  / reaction / complex
 ENSG00000163913 IFT122 / Q9HBG6 / intraflagellar transport 122  / complex
 ENSG00000078246 TULP3 / O75386 / tubby like protein 3  / reaction / complex






 

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