ENSDARG00000031886


Danio rerio

Features
Gene ID: ENSDARG00000031886
  
Biological name :ift140
  
Synonyms : ift140 / intraflagellar transport 140 homolog (Chlamydomonas)
  
Possible biological names infered from orthology : E9PY46 / Intraflagellar transport / intraflagellar transport 140 / Q96RY7
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 37825634
Gene end: 37901493
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126344
Ensembl peptide - ENSDARP00000154811
Ensembl peptide - ENSDARP00000111859
NCBI entrez gene - 553213     See in Manteia.
RefSeq - XM_021473815
RefSeq - XM_690640
swissprot - F1QG20
swissprot - K7DY18
ZFIN ID - ZDB-GENE-040724-165
Ensembl - ENSDARG00000031886
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IFT140ENSGALG00000009318Gallus gallus
 IFT140ENSG00000187535Homo sapiens
 E9PY46ENSMUSG00000024169Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord increased width , abnormal
notochord kinked , abnormal
Show

 ZFA:0000155 somite somite decreased thickness , abnormal
somite increased width , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism anterior region decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000012368 ttc21b / tetratricopeptide repeat domain 21B / Q0HA38* / Q7Z4L5*  / complex
 ENSDARG00000069269 wdr35 / WD repeat domain 35 / Q8BND3* / Q9P2L0*  / complex
 ENSDARG00000063672 zmp:0000000711 / TULP3* / O75386* / tubby like protein 3*  / reaction / complex
 ENSDARG00000058903 si:ch211-237c6.4 / B2RPY5* / GPR161* / Q8N6U8* / G protein-coupled receptor 161*  / reaction / complex
 ENSDARG00000037406 wdr19 / WD repeat domain 19 / Q3UGF1* / Q8NEZ3*  / complex
 ENSDARG00000055659 gpr161 / Q90X46 / G protein-coupled receptor 161 / B2RPY5* / Q8N6U8*  / reaction / complex






 

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