ENSGALG00000009318


Gallus gallus

Features
Gene ID: ENSGALG00000009318
  
Biological name :IFT140
  
Synonyms : IFT140 / intraflagellar transport 140
  
Possible biological names infered from orthology : E9PY46 / Intraflagellar transport / Q96RY7
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 13763149
Gene end: 13840823
  
Corresponding Affymetrix probe sets: Gga.12032.1.S1_at (Chicken Array)   Gga.12787.1.S1_at (Chicken Array)   Gga.18762.1.S1_at (Chicken Array)   Gga.18762.1.S1_s_at (Chicken Array)   GgaAffx.22877.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015148
Ensembl peptide - ENSGALP00000043157
NCBI entrez gene - 416758     See in Manteia.
RefSeq - XM_015294750
RefSeq - NM_001012792
RefSeq - XM_015294749
RefSeq Peptide - NP_001012810
swissprot - R4GLR6
swissprot - F1P2U6
Ensembl - ENSGALG00000009318
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ift140ENSDARG00000031886Danio rerio
 IFT140ENSG00000187535Homo sapiens
 E9PY46ENSMUSG00000024169Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR024977  Anaphase-promoting complex subunit 4, WD40 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0021532 neural tube patterning IEA
 biological_processGO:0031076 embryonic camera-type eye development IEA
 biological_processGO:0035108 limb morphogenesis IEA
 biological_processGO:0035721 intraciliary retrograde transport IBA
 biological_processGO:0035845 photoreceptor cell outer segment organization IEA
 biological_processGO:0042073 intraciliary transport IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0060271 cilium assembly IBA
 biological_processGO:0061512 protein localization to cilium IEA
 biological_processGO:0072001 renal system development IEA
 biological_processGO:1902017 regulation of cilium assembly IEA
 biological_processGO:1905515 non-motile cilium assembly IEA
 biological_processGO:1990403 embryonic brain development IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0005930 axoneme IBA
 cellular_componentGO:0030991 intraciliary transport particle A IBA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0036064 ciliary basal body IBA
 cellular_componentGO:0097730 non-motile cilium IEA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000008452 IFT122 / intraflagellar transport 122 / Q6NWV3* / Q9HBG6* / Intraflagellar transport *  / complex
 ENSGALG00000010956 TTC21B / tetratricopeptide repeat domain 21B / Q0HA38* / Q7Z4L5*  / complex






 

1 s.

 
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