ENSGALG00000010956


Gallus gallus

Features
Gene ID: ENSGALG00000010956
  
Biological name :TTC21B
  
Synonyms : tetratricopeptide repeat domain 21B / TTC21B
  
Possible biological names infered from orthology : Q0HA38 / Q7Z4L5
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 19751570
Gene end: 19782350
  
Corresponding Affymetrix probe sets: GgaAffx.6935.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000037652
Ensembl peptide - ENSGALP00000048247
NCBI entrez gene - 424176     See in Manteia.
RefSeq - XM_422022
RefSeq - XM_015289741
swissprot - E1BX53
swissprot - A0A1D5P6C2
Ensembl - ENSGALG00000010956
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ttc21bENSDARG00000012368Danio rerio
 Q7Z4L5ENSG00000123607Homo sapiens
 Q0HA38ENSMUSG00000034848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011717  Tetratricopeptide TPR-4
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0021591 ventricular system development IEA
 biological_processGO:0021798 forebrain dorsal/ventral pattern formation IEA
 biological_processGO:0035721 intraciliary retrograde transport IBA
 biological_processGO:0061512 protein localization to cilium IBA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0030991 intraciliary transport particle A IBA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000008452 IFT122 / intraflagellar transport 122 / Q6NWV3* / Q9HBG6* / Intraflagellar transport *  / complex
 ENSGALG00000009318 IFT140 / intraflagellar transport 140 / E9PY46* / Q96RY7* / Intraflagellar transport *  / complex






 

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contact: otassy@igbmc.fr