ENSDARG00000012368


Danio rerio

Features
Gene ID: ENSDARG00000012368
  
Biological name :ttc21b
  
Synonyms : tetratricopeptide repeat domain 21B / ttc21b
  
Possible biological names infered from orthology : Q0HA38 / Q7Z4L5
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 49808483
Gene end: 49860756
  
Corresponding Affymetrix probe sets: Dr.18627.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000044269
Ensembl peptide - ENSDARP00000132606
NCBI entrez gene - 569823     See in Manteia.
RefSeq - NM_001128258
RefSeq Peptide - NP_001121730
swissprot - B0R0W1
swissprot - A0A0J9YJ68
ZFIN ID - ZDB-GENE-031010-34
Ensembl - ENSDARG00000012368
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TTC21BENSGALG00000010956Gallus gallus
 Q7Z4L5ENSG00000123607Homo sapiens
 Q0HA38ENSMUSG00000034848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CU633479.7 / Q8NDW8* / TTC21A* / tetratricopeptide repeat domain 21A*ENSDARG000001161462


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007369 gastrulation IMP
 biological_processGO:0035721 intraciliary retrograde transport IBA
 biological_processGO:0061512 protein localization to cilium IBA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0030991 intraciliary transport particle A IBA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord increased width , abnormal
notochord kinked , abnormal
Show

 ZFA:0000155 somite somite decreased thickness , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis shortened , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000058903 si:ch211-237c6.4 / B2RPY5* / GPR161* / Q8N6U8* / G protein-coupled receptor 161*  / complex / reaction
 ENSDARG00000055659 gpr161 / Q90X46 / G protein-coupled receptor 161 / B2RPY5* / Q8N6U8*  / complex / reaction
 ENSDARG00000031886 ift140 / intraflagellar transport 140 homolog (Chlamydomonas) / E9PY46* / Q96RY7* / Intraflagellar transport * / intraflagellar transport 140*  / complex
 ENSDARG00000037406 wdr19 / WD repeat domain 19 / Q3UGF1* / Q8NEZ3*  / complex
 ENSDARG00000069269 wdr35 / WD repeat domain 35 / Q8BND3* / Q9P2L0*  / complex
 ENSDARG00000063672 zmp:0000000711 / TULP3* / O75386* / tubby like protein 3*  / complex / reaction






 

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