ENSDARG00000037406


Danio rerio

Features
Gene ID: ENSDARG00000037406
  
Biological name :wdr19
  
Synonyms : wdr19 / WD repeat domain 19
  
Possible biological names infered from orthology : Q3UGF1 / Q8NEZ3
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 21495850
Gene end: 21538673
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000149826
Ensembl peptide - ENSDARP00000154827
Ensembl peptide - ENSDARP00000113684
Ensembl peptide - ENSDARP00000114539
Ensembl peptide - ENSDARP00000144815
Ensembl peptide - ENSDARP00000148862
NCBI entrez gene - 556414     See in Manteia.
swissprot - E7FGG5
swissprot - F1QRZ1
ZFIN ID - ZDB-GENE-090313-277
Ensembl - ENSDARG00000037406
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WDR19ENSGALG00000014064Gallus gallus
 WDR19ENSG00000157796Homo sapiens
 Wdr19ENSMUSG00000037890Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR024977  Anaphase-promoting complex subunit 4, WD40 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035721 intraciliary retrograde transport IBA
 biological_processGO:0060271 cilium assembly IBA
 cellular_componentGO:0005929 cilium IBA
 cellular_componentGO:0030991 intraciliary transport particle A IBA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle otolith development decreased process quality , abnormal
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 ZFA:0000114 heart heart heart morphogenesis decreased process quality , abnormal
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 ZFA:0000151 pronephros pronephros cystic , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000012368 ttc21b / tetratricopeptide repeat domain 21B / Q0HA38* / Q7Z4L5*  / complex
 ENSDARG00000069269 wdr35 / WD repeat domain 35 / Q8BND3* / Q9P2L0*  / complex
 ENSDARG00000063672 zmp:0000000711 / TULP3* / O75386* / tubby like protein 3*  / reaction / complex
 ENSDARG00000055659 gpr161 / Q90X46 / G protein-coupled receptor 161 / B2RPY5* / Q8N6U8*  / reaction / complex
 ENSDARG00000058903 si:ch211-237c6.4 / B2RPY5* / GPR161* / Q8N6U8* / G protein-coupled receptor 161*  / reaction / complex
 ENSDARG00000031886 ift140 / intraflagellar transport 140 homolog (Chlamydomonas) / E9PY46* / Q96RY7* / Intraflagellar transport * / intraflagellar transport 140*  / complex






 

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