ENSG00000157796


Homo sapiens

Features
Gene ID: ENSG00000157796
  
Biological name :WDR19
  
Synonyms : Q8NEZ3 / WDR19 / WD repeat domain 19
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: p14
Gene start: 39182404
Gene end: 39285810
  
Corresponding Affymetrix probe sets: 1555314_at (Human Genome U133 Plus 2.0 Array)   220917_s_at (Human Genome U133 Plus 2.0 Array)   232163_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000382717
Ensembl peptide - ENSP00000426918
Ensembl peptide - ENSP00000425949
Ensembl peptide - ENSP00000424319
Ensembl peptide - ENSP00000423706
Ensembl peptide - ENSP00000423491
Ensembl peptide - ENSP00000421888
Ensembl peptide - ENSP00000421401
NCBI entrez gene - 57728     See in Manteia.
OMIM - 608151
RefSeq - XM_017008501
RefSeq - NM_001317924
RefSeq - NM_025132
RefSeq - XM_011513724
RefSeq - XM_011513725
RefSeq - XM_011513726
RefSeq - XM_011513727
RefSeq Peptide - NP_001304853
RefSeq Peptide - NP_079408
swissprot - D6RCF7
swissprot - D6RBA0
swissprot - D6RAI4
swissprot - D6R9P6
swissprot - D6RE75
swissprot - Q8NEZ3
swissprot - H0Y8K9
swissprot - D6RIE4
Ensembl - ENSG00000157796
  
Related genetic diseases (OMIM): 614376 - ?Short-rib thoracic dysplasia 5 with or without polydactyly, 614376
  614377 - Nephronophthisis 13, 614377
  614378 - ?Cranioectodermal dysplasia 4, 614378
  616307 - Senior-Loken syndrome 8, 616307
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 wdr19ENSDARG00000037406Danio rerio
 WDR19ENSGALG00000014064Gallus gallus
 Wdr19ENSMUSG00000037890Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR024977  Anaphase-promoting complex subunit 4, WD40 domain
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000902 cell morphogenesis IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0008406 gonad development IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0031076 embryonic camera-type eye development IEA
 biological_processGO:0035721 intraciliary retrograde transport IMP
 biological_processGO:0035735 intraciliary transport involved in cilium assembly TAS
 biological_processGO:0042471 ear morphogenesis IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0050877 nervous system process IEA
 biological_processGO:0055123 digestive system development IEA
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0060830 ciliary receptor clustering involved in smoothened signaling pathway IEA
 biological_processGO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterning IEA
 biological_processGO:0061055 myotome development IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium IBA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0030991 intraciliary transport particle A IEA
 cellular_componentGO:0031514 motile cilium IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097542 ciliary tip TAS
 cellular_componentGO:0097730 non-motile cilium IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000083 Renal failure 
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 HP:0000089 Renal hypoplasia 
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 HP:0000090 Nephronophthisis 
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 HP:0000093 Proteinuria 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000219 Thin upper lip 
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 HP:0000232 Everted lower lip 
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 HP:0000233 Thin vermillion border 
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 HP:0000268 Dolichocephaly 
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 HP:0000269 Prominent occiput 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000319 Flat philtrum 
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 HP:0000411 Protruding ears 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000540 Hypermetropia 
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 HP:0000545 Myopia 
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 HP:0000556 Retinal dystrophy 
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 HP:0000601 Hypotelorism 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000679 Taurodontia 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000766 Abnormality of the sternum 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000774 Narrow chest 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000940 Abnormality of the diaphyses 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000968 Ectodermal dysplasia 
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 HP:0000973 Cutis laxa 
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 HP:0001156 Brachydactyly 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001385 Hip dysplasia 
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 HP:0001392 Abnormality of the liver 
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 HP:0001407 Hepatic cysts 
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 HP:0001737 Pancreatic cysts 
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002612 Congenital hepatic fibrosis 
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 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002983 Micromelia 
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003259 Increased creatinine 
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 HP:0003774 End stage renal disease 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
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 HP:0004442 Sagittal craniosynostosis 
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 HP:0004743 chronic tubulointerstitial nephritis 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006532 Pneumonia, recurrent episodes 
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 HP:0006644 Thoracic dysplasia 
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 HP:0006703 Aplasia/Hypoplasia of the lungs 
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 HP:0007663 Decreased central vision 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008070 Sparse hair 
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 HP:0008081 Valgus foot deformity 
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 HP:0008209 Premature ovarian failure 
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 HP:0008388 Abnormality of the toenails 
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 HP:0008499 High-grade hypermetropia 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008905 Rhizomelic short stature 
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 HP:0009836 Broad distal phalanges of the hand "Abnormally wide (broad) distal phalanges of the fingers." [HPO:curators]
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010174 Broad phalanges of the toes 
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
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 HP:0010579 Cone-shaped epiphyses 
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 HP:0100866 Short iliac bones 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000123607 Q7Z4L5 / TTC21B / tetratricopeptide repeat domain 21B  / complex
 ENSG00000118965 WDR35 / Q9P2L0 / WD repeat domain 35  / complex
 ENSG00000163913 IFT122 / Q9HBG6 / intraflagellar transport 122  / complex
 ENSG00000187535 IFT140 / Q96RY7 / intraflagellar transport 140  / complex
 ENSG00000143147 GPR161 / Q8N6U8 / G protein-coupled receptor 161  / complex / reaction
 ENSG00000078246 TULP3 / O75386 / tubby like protein 3  / complex / reaction






 

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