ENSG00000123607


Homo sapiens

Features
Gene ID: ENSG00000123607
  
Biological name :TTC21B
  
Synonyms : Q7Z4L5 / tetratricopeptide repeat domain 21B / TTC21B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q24.3
Gene start: 165857475
Gene end: 165953843
  
Corresponding Affymetrix probe sets: 220064_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000243344
Ensembl peptide - ENSP00000376460
NCBI entrez gene - 79809     See in Manteia.
OMIM - 612014
RefSeq - XM_017004969
RefSeq - NM_024753
RefSeq - XM_011511872
RefSeq - XM_017004967
RefSeq - XM_017004968
RefSeq - XM_006712761
RefSeq - XM_011511871
RefSeq Peptide - NP_079029
swissprot - Q7Z4L5
swissprot - H9KV93
Ensembl - ENSG00000123607
  
Related genetic diseases (OMIM): 613819 - Short-rib thoracic dysplasia 4 with or without polydactyly, 613819
  613820 - Nephronophthisis 12, 613820
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ttc21bENSDARG00000012368Danio rerio
 TTC21BENSGALG00000010956Gallus gallus
 Q0HA38ENSMUSG00000034848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8NDW8 / TTC21A / tetratricopeptide repeat domain 21AENSG0000016802651


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IMP
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0021591 ventricular system development IEA
 biological_processGO:0021798 forebrain dorsal/ventral pattern formation IEA
 biological_processGO:0035721 intraciliary retrograde transport IEA
 biological_processGO:0035735 intraciliary transport involved in cilium assembly TAS
 biological_processGO:0061512 protein localization to cilium IMP
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0030991 intraciliary transport particle A IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097542 ciliary tip TAS
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000090 Nephronophthisis 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000546 Retinal degeneration 
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 HP:0000766 Abnormality of the sternum 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001156 Brachydactyly 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001392 Abnormality of the liver 
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002983 Micromelia 
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 HP:0003026 Short long bones 
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 HP:0003774 End stage renal disease 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006703 Aplasia/Hypoplasia of the lungs 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008872 Feeding problems in infancy 
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0010579 Cone-shaped epiphyses 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000143147 GPR161 / Q8N6U8 / G protein-coupled receptor 161  / complex / reaction
 ENSG00000187535 IFT140 / Q96RY7 / intraflagellar transport 140  / complex
 ENSG00000157796 WDR19 / Q8NEZ3 / WD repeat domain 19  / complex
 ENSG00000163913 IFT122 / Q9HBG6 / intraflagellar transport 122  / complex
 ENSG00000118965 WDR35 / Q9P2L0 / WD repeat domain 35  / complex
 ENSG00000078246 TULP3 / O75386 / tubby like protein 3  / complex / reaction






 

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