ENSG00000164808


Homo sapiens

Features
Gene ID: ENSG00000164808
  
Biological name :SPIDR
  
Synonyms : Q14159 / scaffolding protein involved in DNA repair / SPIDR
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: q11.21
Gene start: 47260575
Gene end: 47736306
  
Corresponding Affymetrix probe sets: 212523_s_at (Human Genome U133 Plus 2.0 Array)   213003_s_at (Human Genome U133 Plus 2.0 Array)   228325_at (Human Genome U133 Plus 2.0 Array)   236284_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000428287
Ensembl peptide - ENSP00000428222
Ensembl peptide - ENSP00000429193
Ensembl peptide - ENSP00000444061
Ensembl peptide - ENSP00000430965
Ensembl peptide - ENSP00000430941
Ensembl peptide - ENSP00000430664
Ensembl peptide - ENSP00000430091
Ensembl peptide - ENSP00000429997
Ensembl peptide - ENSP00000429805
Ensembl peptide - ENSP00000429487
Ensembl peptide - ENSP00000429448
Ensembl peptide - ENSP00000297423
Ensembl peptide - ENSP00000427878
Ensembl peptide - ENSP00000427889
NCBI entrez gene - 23514     See in Manteia.
OMIM - 615384
RefSeq - XM_017013291
RefSeq - XM_017013275
RefSeq - XM_017013276
RefSeq - XM_017013277
RefSeq - XM_017013278
RefSeq - XM_017013279
RefSeq - XM_017013280
RefSeq - XM_017013281
RefSeq - XM_017013282
RefSeq - XM_017013283
RefSeq - XM_017013284
RefSeq - XM_017013285
RefSeq - XM_017013286
RefSeq - XM_017013287
RefSeq - XM_017013288
RefSeq - XM_017013289
RefSeq - XM_017013290
RefSeq - NM_001080394
RefSeq - NM_001282916
RefSeq - NM_001282919
RefSeq - NM_001352960
RefSeq - XM_005251189
RefSeq - XM_005251191
RefSeq - XM_005251193
RefSeq - XM_005251195
RefSeq - XM_005251198
RefSeq - XM_005251199
RefSeq - XM_006716443
RefSeq - XM_006716444
RefSeq - XM_011517497
RefSeq - XM_011517500
RefSeq - XM_011517507
RefSeq - XM_017013268
RefSeq - XM_017013269
RefSeq - XM_017013270
RefSeq - XM_017013271
RefSeq - XM_017013272
RefSeq - XM_017013273
RefSeq - XM_017013274
RefSeq Peptide - NP_001269848
RefSeq Peptide - NP_001339889
RefSeq Peptide - NP_001073863
RefSeq Peptide - NP_001269845
swissprot - E5RHG3
swissprot - E5RGX8
swissprot - E5RGV8
swissprot - E5RFY2
swissprot - E7EVI9
swissprot - H0YBC9
swissprot - Q14159
swissprot - B3KP42
swissprot - B4DMX9
swissprot - E5RJJ2
swissprot - E5RIU7
swissprot - E5RIB8
Ensembl - ENSG00000164808
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000015226Gallus gallus
 SpidrENSMUSG00000041974Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR028026  Domain of unknown function DUF4502
 IPR028032  Domain of unknown function DUF4503


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000724 double-strand break repair via homologous recombination IMP
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0010569 regulation of double-strand break repair via homologous recombination IDA
 biological_processGO:0031334 positive regulation of protein complex assembly IDA
 biological_processGO:0070202 regulation of establishment of protein localization to chromosome IDA
 biological_processGO:0071479 cellular response to ionizing radiation IDA
 biological_processGO:0072711 cellular response to hydroxyurea IDA
 biological_processGO:0072757 cellular response to camptothecin IDA
 biological_processGO:2000781 positive regulation of double-strand break repair IMP
 cellular_componentGO:0000228 nuclear chromosome IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Resolution of D-loop Structures through Holliday Junction Intermediates


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000133 Gonadal dysgenesis 
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 HP:0000144 Decreased fertility 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000786 Primary amenorrhea 
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 HP:0000823 Delayed puberty 
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 HP:0000837 Elevated gonadotropins 
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 HP:0000869 Secondary amenorrhea 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001939 Metabolism abnormality 
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002225 Sparse pubic hair 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005625 Osteoporosis of vertebrae "Osteoporosis affecting predominantly the vertebrae." [HPO:curators]
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 HP:0008209 Premature ovarian failure 
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 HP:0008214 Decreased serum estradiol 
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 HP:0008684 Absent/hypoplastic uterus 
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 HP:0010311 Aplasia/Hypoplasia of the breasts "Absence or underdevelopment of the breasts." [HPO:curators]
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 HP:0010464 Streak ovary "A developmental disorder characterized by the progressive loss of primordial germ cells in the developing ovaries of an embryo, leading to hypoplastic ovaries composed of wavy connective tissue with occasional clumps of granulosa cells, and frequenty mesonephric or hilar cells." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000175643 RMI2 / Q96E14 / RecQ mediated genome instability 2  / reaction / complex
 ENSG00000178966 RMI1 / Q9H9A7 / RecQ mediated genome instability 1  / complex / reaction
 ENSG00000177302 TOP3A / Q13472 / DNA topoisomerase III alpha  / reaction / complex
 ENSG00000197299 BLM / P54132 / Bloom syndrome RecQ like helicase  / reaction / complex






 

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contact: otassy@igbmc.fr