ENSG00000197299


Homo sapiens

Features
Gene ID: ENSG00000197299
  
Biological name :BLM
  
Synonyms : BLM / Bloom syndrome RecQ like helicase / P54132
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q26.1
Gene start: 90717327
Gene end: 90816165
  
Corresponding Affymetrix probe sets: 205733_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000347232
Ensembl peptide - ENSP00000453359
Ensembl peptide - ENSP00000454158
NCBI entrez gene - 641     See in Manteia.
OMIM - 604610
RefSeq - XM_011521881
RefSeq - NM_000057
RefSeq - NM_001287246
RefSeq - NM_001287247
RefSeq - NM_001287248
RefSeq - XM_006720632
RefSeq Peptide - NP_001274176
RefSeq Peptide - NP_001274175
RefSeq Peptide - NP_000048
RefSeq Peptide - NP_001274177
swissprot - H0YLV8
swissprot - H0YNU5
swissprot - P54132
Ensembl - ENSG00000197299
  
Related genetic diseases (OMIM): 210900 - Bloom syndrome, 210900
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 blmENSDARG00000077089Danio rerio
 BLMENSGALG00000008256Gallus gallus
 BlmENSMUSG00000030528Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WRN / Q14191 / Werner syndrome RecQ like helicaseENSG0000016539219
RECQL / P46063 / RecQ like helicaseENSG0000000470016
O94762 / RECQL5 / RecQ like helicase 5ENSG0000010846916
RECQL4 / RecQ like helicase 4ENSG0000016095715


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR002121  HRDC domain
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR004589  DNA helicase, ATP-dependent, RecQ type
 IPR010997  HRDC-like superfamily
 IPR011545  DEAD/DEAH box helicase domain
 IPR012532  BDHCT
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR018982  RQC domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032284  ATP-dependent DNA helicase RecQ, zinc-binding domain
 IPR032437  Bloom syndrome protein, N-terminal domain
 IPR032439  Bloom syndrome protein, BDHCT-box associated domain
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IMP
 biological_processGO:0000724 double-strand break repair via homologous recombination IBA
 biological_processGO:0000729 DNA double-strand break processing IDA
 biological_processGO:0000731 DNA synthesis involved in DNA repair TAS
 biological_processGO:0000732 strand displacement TAS
 biological_processGO:0000733 DNA strand renaturation IEA
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006281 DNA repair NAS
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IMP
 biological_processGO:0007095 mitotic G2 DNA damage checkpoint IDA
 biological_processGO:0010165 response to X-ray IDA
 biological_processGO:0031297 replication fork processing IDA
 biological_processGO:0032508 DNA duplex unwinding IDA
 biological_processGO:0044237 cellular metabolic process IEA
 biological_processGO:0044806 G-quadruplex DNA unwinding ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045910 negative regulation of DNA recombination IMP
 biological_processGO:0048478 replication fork protection NAS
 biological_processGO:0051259 protein complex oligomerization IDA
 biological_processGO:0051260 protein homooligomerization IDA
 biological_processGO:0051782 negative regulation of cell division IMP
 biological_processGO:0061820 telomeric D-loop disassembly IDA
 biological_processGO:0071479 cellular response to ionizing radiation IDA
 biological_processGO:0072711 cellular response to hydroxyurea IDA
 biological_processGO:0072757 cellular response to camptothecin IDA
 biological_processGO:0090329 regulation of DNA-dependent DNA replication IMP
 biological_processGO:0090656 t-circle formation TAS
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 cellular_componentGO:0000228 nuclear chromosome IDA
 cellular_componentGO:0000781 chromosome, telomeric region IDA
 cellular_componentGO:0000800 lateral element IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005657 replication fork ISS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016363 nuclear matrix IDA
 cellular_componentGO:0016605 PML body IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000400 four-way junction DNA binding IDA
 molecular_functionGO:0000403 Y-form DNA binding IDA
 molecular_functionGO:0000405 bubble DNA binding IDA
 molecular_functionGO:0002039 p53 binding IPI
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003678 DNA helicase activity IDA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004003 ATP-dependent DNA helicase activity IMP
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008026 ATP-dependent helicase activity IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IDA
 molecular_functionGO:0008270 zinc ion binding IDA
 molecular_functionGO:0009378 four-way junction helicase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
 molecular_functionGO:0016887 ATPase activity IDA
 molecular_functionGO:0036310 annealing helicase activity IDA
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0043140 ATP-dependent 3"-5" DNA helicase activity IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051880 G-quadruplex DNA binding IDA
 molecular_functionGO:0061749 forked DNA-dependent helicase activity IDA
 molecular_functionGO:0061821 telomeric D-loop binding IDA
 molecular_functionGO:0061849 telomeric G-quadruplex DNA binding IC
 molecular_functionGO:1905773 8-hydroxy-2"-deoxyguanosine DNA binding IDA


Pathways (from Reactome)
Pathway description
SUMOylation of DNA damage response and repair proteins
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)
Resolution of D-loop Structures through Holliday Junction Intermediates
Homologous DNA Pairing and Strand Exchange
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint
Meiotic recombination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000027 Azoospermia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000246 Sinusitis 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000268 Dolichocephaly 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000275 Narrow face 
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 HP:0000411 Protruding ears 
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 HP:0000448 Prominent nose 
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 HP:0000690 Absent upper lateral incisors 
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 HP:0000868 Decreased fertility in females 
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 HP:0000957 Cafe-au-lait spots 
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 HP:0000960 Sacral dimple "A subtype of `skin dimples` (HP:0010781) presenting as an indentation in the skin of the intergluteal cleft ." [HPO:probinson]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0000998 Hypertrichosis "Hypertrichosis is increased hair growth that is abnormal in quantity or location." [HPO:curators]
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001161 Polydactyly (hands) 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001620 High pitched voice 
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 HP:0001909 Leukemia "A cancer of the blood and bone marrow characterized by an abnormal proliferation of leukocytes." [HPO:curators]
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 HP:0002014 Diarrhea 
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 HP:0002110 Bronchiectasis 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002488 Acute leukemia 
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002720 Decreased IgA 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002850 Decreased IgM 
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 HP:0002860 Squamous cell carcinoma 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003220 Tendency to chromosomal breakage "A type of chromosomal aberration characterized by an increased susceptibility to chromosomal breakage induced by treatment of cultured lymphocytes with agents such as chemical mutagens, irradiation, and alkylating agents." [HPO:curators]
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004315 Decreased IgG level "An abnormally decreased level of immunoglobulin G in blood." [HPO:probinson]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005585 Spotty hyperpigmentation 
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 HP:0005590 Spotty hypopigmentation 
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 HP:0005598 Facial telangiectasia in butterfly midface distribution "Telangiectases (small dilated blood vessels) located near the surface of the skin in a butterfly midface distribution." [HPO:curators]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006528 Chronic lung disease 
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 HP:0007378 Gastrointestinal tract tumors 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0008897 Growth retardation, progressive 
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 HP:0009804 Reduced number of teeth 
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 HP:0010669 Hypoplasia of the zygomatic bone "Underdevelopment of the `zygomatic bone` (FMA:52747)." [HPO:probinson]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0040012 Chromsome breakage 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000136492 BRIP1 / Q9BX63 / BRCA1 interacting protein C-terminal helicase 1  / complex / reaction
 ENSG00000104320 NBN / nibrin / O60934  / complex / reaction
 ENSG00000138376 BARD1 / Q99728 / BRCA1 associated RING domain 1  / reaction / complex
 ENSG00000149311 ATM / Q13315 / ATM serine/threonine kinase  / complex / reaction
 ENSG00000178966 RMI1 / Q9H9A7 / RecQ mediated genome instability 1  / complex
 ENSG00000020922 MRE11 / P49959 / MRE11 homolog, double strand break repair nuclease  / reaction / complex
 ENSG00000184900 SUMO3 / P55854 / small ubiquitin-like modifier 3  / reaction
 ENSG00000177302 TOP3A / Q13472 / DNA topoisomerase III alpha  / complex
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000172977 KAT5 / Q92993 / lysine acetyltransferase 5  / complex / reaction
 ENSG00000101773 RBBP8 / Q99708 / RB binding protein 8, endonuclease  / reaction / complex
 ENSG00000188612 SUMO2 / P61956 / small ubiquitin-like modifier 2  / reaction
 ENSG00000138346 DNA2 / P51530 / DNA replication helicase/nuclease 2  / complex
 ENSG00000012048 BRCA1 / P38398 / BRCA1, DNA repair associated  / reaction / complex
 ENSG00000108384 O43502 / RAD51C / RAD51 paralog C  / reaction
 ENSG00000175643 RMI2 / Q96E14 / RecQ mediated genome instability 2  / complex
 ENSG00000126215 XRCC3 / O43542 / X-ray repair cross complementing 3  / reaction
 ENSG00000175054 ATR / Q13535 / ATR serine/threonine kinase  / complex / reaction
 ENSG00000106399 RPA3 / P35244 / replication protein A3  / complex / reaction
 ENSG00000132383 RPA1 / P27694 / replication protein A1  / complex / reaction
 ENSG00000164808 SPIDR / Q14159 / scaffolding protein involved in DNA repair  / complex / reaction
 ENSG00000117748 RPA2 / P15927 / replication protein A2  / complex / reaction
 ENSG00000164053 ATRIP / Q8WXE1 / ATR interacting protein  / reaction / complex
 ENSG00000113522 RAD50 / Q92878 / RAD50 double strand break repair protein  / complex / reaction






 

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