ENSG00000104320


Homo sapiens

Features
Gene ID: ENSG00000104320
  
Biological name :NBN
  
Synonyms : NBN / nibrin / O60934
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q21.3
Gene start: 89933336
Gene end: 90003228
  
Corresponding Affymetrix probe sets: 202905_x_at (Human Genome U133 Plus 2.0 Array)   202906_s_at (Human Genome U133 Plus 2.0 Array)   202907_s_at (Human Genome U133 Plus 2.0 Array)   217299_s_at (Human Genome U133 Plus 2.0 Array)   240510_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000265433
Ensembl peptide - ENSP00000484487
Ensembl peptide - ENSP00000430983
Ensembl peptide - ENSP00000429971
Ensembl peptide - ENSP00000428717
Ensembl peptide - ENSP00000428252
Ensembl peptide - ENSP00000386924
Ensembl peptide - ENSP00000379551
NCBI entrez gene - 4683     See in Manteia.
OMIM - 602667
RefSeq - XM_017013462
RefSeq - NM_001024688
RefSeq - NM_002485
RefSeq - XM_011517045
RefSeq - XM_011517046
RefSeq - XM_017013460
RefSeq - XM_017013461
RefSeq Peptide - NP_001019859
RefSeq Peptide - NP_002476
swissprot - E2QRP0
swissprot - A0A0C4DG07
swissprot - A0A087X1V5
swissprot - E5RGR7
swissprot - E5RGU1
swissprot - O60934
swissprot - E5RGN7
Ensembl - ENSG00000104320
  
Related genetic diseases (OMIM): 251260 - Nijmegen breakage syndrome, 251260
  609135 - Aplastic anemia, 609135
  613065 - Leukemia, acute lymphoblastic, 613065
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nbnENSDARG00000040303Danio rerio
 NBNENSGALG00000037686Gallus gallus
 NbnENSMUSG00000028224Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000253  Forkhead-associated (FHA) domain
 IPR001357  BRCT domain
 IPR008984  SMAD/FHA domain superfamily
 IPR013908  DNA repair Nbs1, C-terminal
 IPR016592  Nibrin
 IPR032429  Nibrin, second BRCT domain
 IPR036420  BRCT domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000077 DNA damage checkpoint IDA
 biological_processGO:0000723 telomere maintenance IEA
 biological_processGO:0000724 double-strand break repair via homologous recombination TAS
 biological_processGO:0000729 DNA double-strand break processing TAS
 biological_processGO:0000731 DNA synthesis involved in DNA repair TAS
 biological_processGO:0000732 strand displacement TAS
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001832 blastocyst growth IEA
 biological_processGO:0006260 DNA replication TAS
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006302 double-strand break repair IDA
 biological_processGO:0006303 double-strand break repair via nonhomologous end joining TAS
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007050 cell cycle arrest TAS
 biological_processGO:0007093 mitotic cell cycle checkpoint IEA
 biological_processGO:0007095 mitotic G2 DNA damage checkpoint IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0030174 regulation of DNA-dependent DNA replication initiation TAS
 biological_processGO:0030330 DNA damage response, signal transduction by p53 class mediator TAS
 biological_processGO:0031860 telomeric 3" overhang formation IMP
 biological_processGO:0031954 positive regulation of protein autophosphorylation IDA
 biological_processGO:0032206 positive regulation of telomere maintenance IMP
 biological_processGO:0032508 DNA duplex unwinding IMP
 biological_processGO:0033674 positive regulation of kinase activity IDA
 biological_processGO:0045190 isotype switching IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 biological_processGO:0051321 meiotic cell cycle IEA
 biological_processGO:0090656 t-circle formation IMP
 biological_processGO:0090737 telomere maintenance via telomere trimming IGI
 biological_processGO:0097193 intrinsic apoptotic signaling pathway IEA
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 biological_processGO:1904354 negative regulation of telomere capping IMP
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005657 replication fork IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016605 PML body IEA
 cellular_componentGO:0030870 Mre11 complex IEA
 cellular_componentGO:0035861 site of double-strand break IDA
 cellular_componentGO:0042405 nuclear inclusion body IDA
 molecular_functionGO:0003684 damaged DNA binding IEA
 molecular_functionGO:0004003 ATP-dependent DNA helicase activity IMP
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0047485 protein N-terminus binding IPI


Pathways (from Reactome)
Pathway description
DNA Damage/Telomere Stress Induced Senescence
HDR through Single Strand Annealing (SSA)
HDR through MMEJ (alt-NHEJ)
HDR through Homologous Recombination (HRR)
Sensing of DNA Double Strand Breaks
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)
Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Resolution of D-loop Structures through Holliday Junction Intermediates
Nonhomologous End-Joining (NHEJ)
Homologous DNA Pairing and Strand Exchange
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint
Meiotic recombination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000126 Hydronephrosis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000246 Sinusitis 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000265 Mastoiditis 
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 HP:0000278 Retrognathia 
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000364 Hearing abnormality 
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 HP:0000388 Otitis media 
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 HP:0000400 Large ears 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000444 Beaked nose 
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 HP:0000448 Prominent nose 
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 HP:0000453 Choanal atresia "Absence or abnormal closure of the choana (the posterior nasal aperture)." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000752 Hyperactivity 
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 HP:0000957 Cafe-au-lait spots 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001268 Mental deterioration 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001480 Freckling 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001873 Thrombocytopenia 
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 HP:0001890 Autoimmune hemolytic anemia 
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 HP:0001915 Aplastic anemia 
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 HP:0002002 Deep philtrum 
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 HP:0002014 Diarrhea 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
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 HP:0002028 Chronic diarrhea 
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 HP:0002110 Bronchiectasis 
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 HP:0002180 Neurodegeneration 
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 HP:0002269 Neuronal migration disorder 
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 HP:0002488 Acute leukemia 
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002837 Bronchitis 
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 HP:0002859 Rhabdomyosarcoma 
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 HP:0002861 Malignant melanoma "A malignant skin tumor of originating from melanocytes, pigment cells normally present in the epidermis and sometimes in the dermis." [HPO:curators]
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 HP:0002878 Early respiratory failure 
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 HP:0002885 Medulloblastoma 
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 HP:0002894 Pancreatic cancer 
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 HP:0002961 Dysgammaglobulinemia 
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 HP:0003002 Breast cancer 
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 HP:0003189 Long nose 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003220 Tendency to chromosomal breakage "A type of chromosomal aberration characterized by an increased susceptibility to chromosomal breakage induced by treatment of cultured lymphocytes with agents such as chemical mutagens, irradiation, and alkylating agents." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004326 Cachexia 
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 HP:0004798 Gastrointestinal infections 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005403 Reduced number of T cells 
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 HP:0005425 Recurrent sinopulmonary infections 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0005602 Progressive vitiligo 
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 HP:0006532 Pneumonia, recurrent episodes 
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 HP:0006721 Acute lymphatic leukemia "A form of acute leukemia characterized by excess lympoblasts." [HPO:curators]
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0008209 Premature ovarian failure 
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 HP:0009733 Glioma "A type of brain or spinal tumor originating from a glial cell. Gliomas can be classified as 1) ependymomas, 2) astrocytomas (including glioblastoma multiforme), 3 oligodendrogliomas, and 4) mixed gliomas, such as oligoastrocytomas." [HPO:curators]
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 HP:0010620 Prominent malar region "Increased prominence of the malar region (cheeks)." [HPO:curators]
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 HP:0010976 Reduction in B cell number "An abnormal decrease from the normal count of `B cells` (CL:0000236)." [HPO:probinson]
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 HP:0010982 Polygenic inheritance "A type of multifactorial inheritance governed by the simultaneous action of many (more than three) gene loci." [HPO:probinson, ISBN:978-0192628961]
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 HP:0011027 Abnormality of the fallopian tube "An abnormality of the `fallopian tube` (FMA:18245)." [HPO:probinson]
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 HP:0011362 Abnormal hair quantity "An abnormal amount of hair." [DDD:cmoss]
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 HP:0012125 Prostate cancer "A cancer of the `prostate` (FMA:9600)." [HPO:probinson]
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 HP:0012190 T-cell lymphoma "A type of lymphoma that originates in T-cells." [HPO:probinson]
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 HP:0012191 B-cell lymphoma "A type of lymphoma that originates in B-cells." [HPO:probinson]
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 HP:0030406 Primary peritoneal carcinoma "A type of cancer that originates in the peritoneam. It is to be distinguished from metastatic cancer of the peritoneum. Peritoneal cancer can occur anywhere in the abdominal space, and affects the surface of organs contained inside the peritoneum." [HPO:probinson]
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 HP:0100335 Non-midline cleft lip 
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 HP:0100515 Pollakisuria "Increased frequency of urination." [HPO:probinson]
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 HP:0100615 Ovarian neoplasm "The presence of a `neoplasm` (MPATH:218) the `ovary` (FMA:7209)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000011485 PPP5C / P53041 / protein phosphatase 5 catalytic subunit  / reaction
 ENSG00000127663 KDM4B / O94953 / lysine demethylase 4B  / reaction / complex
 ENSG00000080345 RIF1 / Q5UIP0 / replication timing regulatory factor 1  / complex / reaction
 ENSG00000136492 BRIP1 / Q9BX63 / BRCA1 interacting protein C-terminal helicase 1  / reaction / complex
 ENSG00000051341 POLQ / O75417 / DNA polymerase theta  / complex / reaction
 ENSG00000132383 RPA1 / P27694 / replication protein A1  / reaction / complex
 ENSG00000012048 BRCA1 / P38398 / BRCA1, DNA repair associated  / reaction / complex
 ENSG00000005156 LIG3 / P49916 / DNA ligase 3  / reaction / complex
 ENSG00000177889 UBE2N / P61088 / ubiquitin conjugating enzyme E2 N  / complex / reaction
 ENSG00000175054 ATR / Q13535 / ATR serine/threonine kinase  / reaction / complex
 ENSG00000183765 CHEK2 / O96017 / checkpoint kinase 2  / reaction / complex
 ENSG00000188486 H2AFX / P16104 / H2A histone family member X  / reaction / complex
 ENSG00000149311 ATM / Q13315 / ATM serine/threonine kinase  / complex / reaction
 ENSG00000164053 ATRIP / Q8WXE1 / ATR interacting protein  / complex / reaction
 ENSG00000073050 XRCC1 / P18887 / X-ray repair cross complementing 1  / complex / reaction
 ENSG00000168148 Q16695 / HIST3H3 / histone cluster 3 H3  / reaction / complex
 ENSG00000197299 BLM / P54132 / Bloom syndrome RecQ like helicase  / complex / reaction
 ENSG00000177302 TOP3A / Q13472 / DNA topoisomerase III alpha  / reaction / complex
 ENSG00000113522 RAD50 / Q92878 / RAD50 double strand break repair protein  / complex / reaction
 ENSG00000182481 KPNA2 / P52292 / karyopherin subunit alpha 2  / reaction / complex
 ENSG00000175643 RMI2 / Q96E14 / RecQ mediated genome instability 2  / reaction / complex
 ENSG00000165392 WRN / Q14191 / Werner syndrome RecQ like helicase  / reaction / complex
 ENSG00000020922 MRE11 / P49959 / MRE11 homolog, double strand break repair nuclease  / complex / reaction
 ENSG00000101773 RBBP8 / Q99708 / RB binding protein 8, endonuclease  / complex / reaction
 ENSG00000174371 EXO1 / Q9UQ84 / exonuclease 1  / complex / reaction
 ENSG00000137337 MDC1 / Q14676 / mediator of DNA damage checkpoint 1  / reaction / complex
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / complex / reaction
 ENSG00000105229 PIAS4 / Q8N2W9 / protein inhibitor of activated STAT 4  / reaction / complex
 ENSG00000128731 HERC2 / O95714 / HECT and RLD domain containing E3 ubiquitin protein ligase 2  / reaction / complex
 ENSG00000067369 Q12888 / TP53BP1 / tumor protein p53 binding protein 1  / reaction / complex
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / reaction / complex
 ENSG00000188612 SUMO2 / P61956 / small ubiquitin-like modifier 2  / reaction / complex
 ENSG00000123374 CDK2 / P24941 / cyclin dependent kinase 2  / complex / reaction
 ENSG00000117748 RPA2 / P15927 / replication protein A2  / reaction / complex
 ENSG00000109685 NSD2 / O96028 / nuclear receptor binding SET domain protein 2  / reaction / complex
 ENSG00000163961 Q8IYW5 / RNF168 / ring finger protein 168  / complex / reaction
 ENSG00000172977 KAT5 / Q92993 / lysine acetyltransferase 5  / reaction / complex
 ENSG00000169139 Q15819 / UBE2V2 / ubiquitin conjugating enzyme E2 V2  / complex / reaction
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000112130 RNF8 / O76064 / ring finger protein 8  / reaction / complex
 ENSG00000138376 BARD1 / Q99728 / BRCA1 associated RING domain 1  / complex / reaction
 ENSG00000178966 RMI1 / Q9H9A7 / RecQ mediated genome instability 1  / reaction / complex
 ENSG00000106399 RPA3 / P35244 / replication protein A3  / reaction / complex
 ENSG00000138346 DNA2 / P51530 / DNA replication helicase/nuclease 2  / reaction / complex
 ENSG00000157212 PAXIP1 / Q6ZW49 / PAX interacting protein 1  / reaction / complex
 ENSG00000166313 APBB1 / O00213 / amyloid beta precursor protein binding family B member 1  / reaction / complex
 ENSG00000168496 FEN1 / P39748 / flap structure-specific endonuclease 1  / complex / reaction
 ENSG00000163322 Q6UWZ7 / ABRAXAS1 / abraxas 1, BRCA1 A complex subunit  / complex / reaction
 ENSG00000196419 XRCC6 / P12956 / X-ray repair cross complementing 6  / reaction
 ENSG00000152457 Q96SD1 / DCLRE1C / DNA cross-link repair 1C  / complex / reaction
 ENSG00000107643 MAPK8 / P45983 / mitogen-activated protein kinase 8  / complex / reaction
 ENSG00000158161 EYA3 / Q99504 / EYA transcriptional coactivator and phosphatase 3  / reaction
 ENSG00000143799 PARP1 / P09874 / poly(ADP-ribose) polymerase 1  / reaction / complex
 ENSG00000066135 KDM4A / O75164 / lysine demethylase 4A  / complex / reaction
 ENSG00000079246 XRCC5 / P13010 / X-ray repair cross complementing 5  / reaction
 ENSG00000087206 UIMC1 / Q96RL1 / ubiquitin interaction motif containing 1  / reaction / complex






 

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