ENSG00000175054


Homo sapiens

Features
Gene ID: ENSG00000175054
  
Biological name :ATR
  
Synonyms : ATR / ATR serine/threonine kinase / Q13535
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q23
Gene start: 142449235
Gene end: 142578826
  
Corresponding Affymetrix probe sets: 209902_at (Human Genome U133 Plus 2.0 Array)   209903_s_at (Human Genome U133 Plus 2.0 Array)   233288_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000424355
Ensembl peptide - ENSP00000422553
Ensembl peptide - ENSP00000425897
Ensembl peptide - ENSP00000426595
Ensembl peptide - ENSP00000343741
Ensembl peptide - ENSP00000421870
NCBI entrez gene - 545     See in Manteia.
OMIM - 601215
RefSeq - XM_017006643
RefSeq - NM_001184
RefSeq - XM_011512924
RefSeq - XM_011512925
RefSeq - XM_011512926
RefSeq Peptide - NP_001175
swissprot - Q13535
swissprot - D6RFJ6
swissprot - H0Y8R8
swissprot - H0Y8Y6
swissprot - H0Y9K2
swissprot - D6RIG7
Ensembl - ENSG00000175054
  
Related genetic diseases (OMIM): 210600 - Seckel syndrome 1, 210600
  614564 - ?Cutaneous telangiectasia and cancer syndrome, familial, 614564
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atrENSDARG00000079625Danio rerio
 ATRENSGALG00000002663Gallus gallus
 AtrENSMUSG00000032409Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRKDC / P78527 / protein kinase, DNA-activated, catalytic polypeptideENSG0000025372918


Protein motifs (from Interpro)
Interpro ID Name
 IPR000403  Phosphatidylinositol 3-/4-kinase, catalytic domain
 IPR003151  PIK-related kinase, FAT
 IPR003152  FATC domain
 IPR011009  Protein kinase-like domain superfamily
 IPR011989  Armadillo-like helical
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR012993  UME domain
 IPR014009  PIK-related kinase
 IPR016024  Armadillo-type fold
 IPR018936  Phosphatidylinositol 3/4-kinase, conserved site
 IPR021133  HEAT, type 2
 IPR036940  Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000077 DNA damage checkpoint IDA
 biological_processGO:0006260 DNA replication TAS
 biological_processGO:0006281 DNA repair TAS
 biological_processGO:0006974 cellular response to DNA damage stimulus TAS
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0008156 negative regulation of DNA replication IMP
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0018105 peptidyl-serine phosphorylation IDA
 biological_processGO:0032212 positive regulation of telomere maintenance via telomerase ISS
 biological_processGO:0034644 cellular response to UV IMP
 biological_processGO:0036297 interstrand cross-link repair TAS
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0043517 positive regulation of DNA damage response, signal transduction by p53 class mediator IMP
 biological_processGO:0046777 protein autophosphorylation IDA
 biological_processGO:0070198 protein localization to chromosome, telomeric region IMP
 biological_processGO:0071480 cellular response to gamma radiation IDA
 biological_processGO:0090399 replicative senescence IMP
 biological_processGO:0097694 establishment of RNA localization to telomere IMP
 biological_processGO:0097695 establishment of protein-containing complex localization to telomere IC
 biological_processGO:1900034 regulation of cellular response to heat TAS
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 biological_processGO:1904884 positive regulation of telomerase catalytic core complex assembly IMP
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IC
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome ISS
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0016605 PML body IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004672 protein kinase activity TAS
 molecular_functionGO:0004674 protein serine/threonine kinase activity TAS
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0032405 MutLalpha complex binding IDA
 molecular_functionGO:0032407 MutSalpha complex binding IDA


Pathways (from Reactome)
Pathway description
Meiotic synapsis
Activation of ATR in response to replication stress
Regulation of HSF1-mediated heat shock response
HDR through Single Strand Annealing (SSA)
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Fanconi Anemia Pathway
TP53 Regulates Transcription of DNA Repair Genes
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000237 Small anterior fontanelle "Abnormally decreased size of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000275 Narrow face 
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 HP:0000324 Facial asymmetry 
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000387 Lobeless ears 
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 HP:0000444 Beaked nose 
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 HP:0000448 Prominent nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000670 Carious teeth 
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 HP:0000678 Dental overcrowding 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000752 Hyperactivity 
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 HP:0000878 11 pairs of ribs 
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0001009 Telangiectasia "Telangiectasias refer to small dilated blood vessels located near the surface of the skin or mucous membranes, measuring between 0.5 and 1 millimeter in diameter." [HPO:curators]
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 HP:0001090 Large eyes 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001385 Hip dysplasia 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001592 Selective tooth agenesis 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001807 Nail ridging 
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0001876 Pancytopenia 
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 HP:0001883 Talipes 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0002987 Elbow contractures 
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 HP:0003002 Breast cancer 
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 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
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 HP:0003508 Proportionate short stature "Short stature affecting the trunk and the limbs proportionately." [HPO:curators]
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004326 Cachexia 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006143 Abnormal finger flexion creases 
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0006434 Hypoplasia of proximal radius 
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 HP:0006442 Hypoplasia of proximal fibula 
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 HP:0007048 Large basal ganglia 
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 HP:0007495 Prematurely aged appearance 
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 HP:0008665 Hypertrophic clitoris 
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 HP:0008897 Growth retardation, progressive 
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 HP:0009804 Reduced number of teeth 
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 HP:0010230 Cone-shaped epiphyses of the phalanges of the hand "A cone-shaped appearance of the epiphyses of the fingers of the hand, producing a ball-in-a-socket appearance. The related entity angel-shaped epiphysis refers to a pronounced cone-shaped epiphysis in combination with a pseudoepiphysis at the distal end of a phalanx." [HPO:curators]
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 HP:0010579 Cone-shaped epiphyses 
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 HP:0010583 Ivory epiphyses 
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 HP:0011342 Mild global developmental delay "A mild delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000106399 RPA3 / P35244 / replication protein A3  / reaction / complex
 ENSG00000136492 BRIP1 / Q9BX63 / BRCA1 interacting protein C-terminal helicase 1  / reaction / complex
 ENSG00000132383 RPA1 / P27694 / replication protein A1  / reaction / complex
 ENSG00000104320 NBN / nibrin / O60934  / reaction / complex
 ENSG00000138376 BARD1 / Q99728 / BRCA1 associated RING domain 1  / complex / reaction
 ENSG00000175643 RMI2 / Q96E14 / RecQ mediated genome instability 2  / reaction / complex
 ENSG00000144554 FANCD2 / Q9BXW9 / Fanconi anemia complementation group D2  / complex / reaction
 ENSG00000165392 WRN / Q14191 / Werner syndrome RecQ like helicase  / complex / reaction
 ENSG00000140525 FANCI / Q9NVI1 / Fanconi anemia complementation group I  / reaction / complex
 ENSG00000117748 RPA2 / P15927 / replication protein A2  / complex / reaction
 ENSG00000149311 ATM / Q13315 / ATM serine/threonine kinase  / reaction / complex
 ENSG00000178966 RMI1 / Q9H9A7 / RecQ mediated genome instability 1  / complex / reaction
 ENSG00000020922 MRE11 / P49959 / MRE11 homolog, double strand break repair nuclease  / complex / reaction
 ENSG00000177302 TOP3A / Q13472 / DNA topoisomerase III alpha  / complex / reaction
 ENSG00000172977 KAT5 / Q92993 / lysine acetyltransferase 5  / complex / reaction
 ENSG00000101773 RBBP8 / Q99708 / RB binding protein 8, endonuclease  / reaction / complex
 ENSG00000138346 DNA2 / P51530 / DNA replication helicase/nuclease 2  / reaction / complex
 ENSG00000012048 BRCA1 / P38398 / BRCA1, DNA repair associated  / reaction / complex
 ENSG00000174371 EXO1 / Q9UQ84 / exonuclease 1  / complex / reaction
 ENSG00000141510 TP53 / P04637 / tumor protein p53  / reaction
 ENSG00000188486 H2AFX / P16104 / H2A histone family member X  / reaction / complex
 ENSG00000196074 SYCP2 / Q9BX26 / synaptonemal complex protein 2  / reaction / complex
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / reaction / complex
 ENSG00000097046 CDC7 / O00311 / cell division cycle 7  / reaction
 ENSG00000164053 ATRIP / Q8WXE1 / ATR interacting protein  / complex
 ENSG00000168148 Q16695 / HIST3H3 / histone cluster 3 H3  / reaction / complex
 ENSG00000158941 CCAR2 / Q8N163 / cell cycle and apoptosis regulator 2  / reaction
 ENSG00000094804 CDC6 / Q99741 / cell division cycle 6  / reaction
 ENSG00000139351 SYCP3 / Q8IZU3 / synaptonemal complex protein 3  / reaction / complex
 ENSG00000092853 CLSPN / Q9HAW4 / claspin  / reaction
 ENSG00000123374 CDK2 / P24941 / cyclin dependent kinase 2  / reaction
 ENSG00000149554 CHEK1 / O14757 / checkpoint kinase 1  / reaction
 ENSG00000093009 CDC45 / O75419 / cell division cycle 45  / reaction
 ENSG00000065328 MCM10 / Q7L590 / minichromosome maintenance 10 replication initiation factor  / reaction
 ENSG00000006634 DBF4 / Q9UBU7 / DBF4 zinc finger  / reaction
 ENSG00000197299 BLM / P54132 / Bloom syndrome RecQ like helicase  / reaction / complex
 ENSG00000077152 UBE2T / Q9NPD8 / ubiquitin conjugating enzyme E2 T  / complex / reaction
 ENSG00000113522 RAD50 / Q92878 / RAD50 double strand break repair protein  / complex / reaction






 

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