ENSG00000101773


Homo sapiens

Features
Gene ID: ENSG00000101773
  
Biological name :RBBP8
  
Synonyms : Q99708 / RB binding protein 8, endonuclease / RBBP8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: 1
Band: q11.2
Gene start: 22798261
Gene end: 23026488
  
Corresponding Affymetrix probe sets: 203344_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464628
Ensembl peptide - ENSP00000464284
Ensembl peptide - ENSP00000464691
Ensembl peptide - ENSP00000477396
Ensembl peptide - ENSP00000323050
Ensembl peptide - ENSP00000354024
Ensembl peptide - ENSP00000382627
Ensembl peptide - ENSP00000382628
Ensembl peptide - ENSP00000382630
Ensembl peptide - ENSP00000462390
Ensembl peptide - ENSP00000463310
Ensembl peptide - ENSP00000463439
Ensembl peptide - ENSP00000463544
Ensembl peptide - ENSP00000463738
NCBI entrez gene - 5932     See in Manteia.
OMIM - 604124
RefSeq - XM_017025916
RefSeq - NM_002894
RefSeq - NM_203291
RefSeq - NM_203292
RefSeq - XM_005258325
RefSeq - XM_005258326
RefSeq - XM_006722519
RefSeq - XM_006722520
RefSeq - XM_006722521
RefSeq - XM_011526132
RefSeq - XM_017025915
RefSeq Peptide - NP_976036
RefSeq Peptide - NP_976037
RefSeq Peptide - NP_002885
swissprot - A0A140TA82
swissprot - F6Q6H0
swissprot - I6L8A6
swissprot - J3KSA4
swissprot - J3QL00
swissprot - J3QL93
swissprot - J3QLH2
swissprot - J3QLW6
swissprot - J3QRM0
swissprot - Q99708
swissprot - J3QSH7
swissprot - V9GZ40
swissprot - A0A024RC34
Ensembl - ENSG00000101773
  
Related genetic diseases (OMIM): 251255 - Jawad syndrome, 251255
  604124 - Pancreatic carcinoma, somatic
  606744 - Seckel syndrome 2, 606744
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbbp8ENSDARG00000043480Danio rerio
 RBBP8ENSGALG00000014982Gallus gallus
 Rbbp8ENSMUSG00000041238Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8NC74 / RBBP8NL / RBBP8 N-terminal likeENSG0000013070116


Protein motifs (from Interpro)
Interpro ID Name
 IPR013882  DNA endonuclease Ctp1, C-terminal
 IPR019518  DNA endonuclease Ctp1, N-terminal
 IPR033316  DNA endonuclease RBBP8-like
 IPR033594  DNA endonuclease RBBP8


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000082 G1/S transition of mitotic cell cycle IEA
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000724 double-strand break repair via homologous recombination IEA
 biological_processGO:0000729 DNA double-strand break processing TAS
 biological_processGO:0000731 DNA synthesis involved in DNA repair TAS
 biological_processGO:0000732 strand displacement TAS
 biological_processGO:0001835 blastocyst hatching IEA
 biological_processGO:0006260 DNA replication TAS
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006289 nucleotide-excision repair IMP
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0010792 DNA double-strand break processing involved in repair via single-strand annealing IEA
 biological_processGO:0031572 G2 DNA damage checkpoint IDA
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051321 meiotic cell cycle IEA
 biological_processGO:0070317 negative regulation of G0 to G1 transition TAS
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 biological_processGO:1903507 negative regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0017053 transcriptional repressor complex IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0000014 single-stranded DNA endodeoxyribonuclease activity IMP
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IPI
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003684 damaged DNA binding IDA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
HDR through Single Strand Annealing (SSA)
HDR through MMEJ (alt-NHEJ)
HDR through Homologous Recombination (HRR)
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)
Resolution of D-loop Structures through Holliday Junction Intermediates
Homologous DNA Pairing and Strand Exchange
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint
Transcriptional Regulation by E2F6
Meiotic recombination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
Show

 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
Show

 HP:0000171 Microglossia 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000275 Narrow face 
Show

 HP:0000278 Retrognathia 
Show

 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000387 Lobeless ears 
Show

 HP:0000444 Beaked nose 
Show

 HP:0000448 Prominent nose 
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
Show

 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
Show

 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
Show

 HP:0000691 Microdontia 
Show

 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001321 Cerebellar hypoplasia 
Show

 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
Show

 HP:0001385 Hip dysplasia 
Show

 HP:0001510 Growth retardation 
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001518 Low birth weight 
Show

 HP:0001620 High pitched voice 
Show

 HP:0001822 Hallux valgus "Lateral deviation of the great toe (i.e., in the direction of the little toe)." [HPO:curators]
Show

 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
Show

 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
Show

 HP:0002943 Thoracic scoliosis 
Show

 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
Show

 HP:0004220 Hypoplastic/small middle phalanx of the 5th finger "Absence or underdevelopment (hypoplasia) of the middle phalanx of the little (5th) finger." [HPO:curators]
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004326 Cachexia 
Show

 HP:0004692 4-5 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes four and five." [HPO:sdoelken]
Show

 HP:0005692 Joint hyperflexibility 
Show

 HP:0005780 No fourth finger distal interphalangeal crease 
Show

 HP:0006216 Single interphalangeal crease of fifth finger 
Show

 HP:0007429 Few pale relatively large cafe-au-lait spots 
Show

 HP:0007495 Prematurely aged appearance 
Show

 HP:0009804 Reduced number of teeth 
Show

 HP:0010579 Cone-shaped epiphyses 
Show

 HP:0011342 Mild global developmental delay "A mild delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
Show

 HP:0011451 Congenital microcephaly "Microcephaly (HP:0000252) that is present already at the time of birth." [HPO:probinson]
Show

 HP:0030148 Heart murmur "An extra or unusual sound heard during a heartbeat caused vibrations resulting from the flow of blood through the heart." [HPO:probinson]
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000136492 BRIP1 / Q9BX63 / BRCA1 interacting protein C-terminal helicase 1  / complex / reaction
 ENSG00000051341 POLQ / O75417 / DNA polymerase theta  / complex / reaction
 ENSG00000104320 NBN / nibrin / O60934  / complex / reaction
 ENSG00000077463 SIRT6 / Q8N6T7 / sirtuin 6  / reaction
 ENSG00000149311 ATM / Q13315 / ATM serine/threonine kinase  / complex / reaction
 ENSG00000168496 FEN1 / P39748 / flap structure-specific endonuclease 1  / complex / reaction
 ENSG00000020922 MRE11 / P49959 / MRE11 homolog, double strand break repair nuclease  / complex / reaction
 ENSG00000172977 KAT5 / Q92993 / lysine acetyltransferase 5  / complex / reaction
 ENSG00000083093 PALB2 / Q86YC2 / partner and localizer of BRCA2  / complex
 ENSG00000106399 RPA3 / P35244 / replication protein A3  / reaction / complex
 ENSG00000178966 RMI1 / Q9H9A7 / RecQ mediated genome instability 1  / reaction / complex
 ENSG00000117748 RPA2 / P15927 / replication protein A2  / reaction / complex
 ENSG00000138376 BARD1 / Q99728 / BRCA1 associated RING domain 1  / complex / reaction
 ENSG00000139618 BRCA2 / P51587 / BRCA2, DNA repair associated  / complex
 ENSG00000123374 CDK2 / P24941 / cyclin dependent kinase 2  / complex / reaction
 ENSG00000164053 ATRIP / Q8WXE1 / ATR interacting protein  / reaction / complex
 ENSG00000111247 Q96B01 / RAD51AP1 / RAD51 associated protein 1  / complex
 ENSG00000165392 WRN / Q14191 / Werner syndrome RecQ like helicase  / complex / reaction
 ENSG00000113522 RAD50 / Q92878 / RAD50 double strand break repair protein  / complex / reaction
 ENSG00000175643 RMI2 / Q96E14 / RecQ mediated genome instability 2  / complex / reaction
 ENSG00000177302 TOP3A / Q13472 / DNA topoisomerase III alpha  / reaction / complex
 ENSG00000138346 DNA2 / P51530 / DNA replication helicase/nuclease 2  / reaction / complex
 ENSG00000073050 XRCC1 / P18887 / X-ray repair cross complementing 1  / reaction / complex
 ENSG00000175054 ATR / Q13535 / ATR serine/threonine kinase  / reaction / complex
 ENSG00000012048 BRCA1 / P38398 / BRCA1, DNA repair associated  / reaction / complex
 ENSG00000005156 LIG3 / P49916 / DNA ligase 3  / reaction / complex
 ENSG00000051180 RAD51 / Q06609 / RAD51 recombinase  / complex
 ENSG00000132383 RPA1 / P27694 / replication protein A1  / reaction / complex
 ENSG00000197299 BLM / P54132 / Bloom syndrome RecQ like helicase  / complex / reaction
 ENSG00000174371 EXO1 / Q9UQ84 / exonuclease 1  / complex / reaction
 ENSG00000101773 RBBP8 / Q99708 / RB binding protein 8, endonuclease  / complex
 ENSG00000143799 PARP1 / P09874 / poly(ADP-ribose) polymerase 1  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr