ENSG00000165392


Homo sapiens

Features
Gene ID: ENSG00000165392
  
Biological name :WRN
  
Synonyms : Q14191 / Werner syndrome RecQ like helicase / WRN
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: p12
Gene start: 31033801
Gene end: 31173769
  
Corresponding Affymetrix probe sets: 205667_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000298139
NCBI entrez gene - 7486     See in Manteia.
OMIM - 604611
RefSeq - XM_011544640
RefSeq - NM_000553
RefSeq - XM_011544639
RefSeq Peptide - NP_000544
swissprot - Q14191
Ensembl - ENSG00000165392
  
Related genetic diseases (OMIM): 277700 - Werner syndrome, 277700
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 wrnENSDARG00000098211Danio rerio
 WRNENSGALG00000040909Gallus gallus
 WrnENSMUSG00000031583Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BLM / P54132 / Bloom syndrome RecQ like helicaseENSG0000019729919
RECQL4 / RecQ like helicase 4ENSG0000016095714
O94762 / RECQL5 / RecQ like helicase 5ENSG0000010846913
RECQL / P46063 / RecQ like helicaseENSG0000000470012


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR002121  HRDC domain
 IPR002562  3"-5" exonuclease domain
 IPR004589  DNA helicase, ATP-dependent, RecQ type
 IPR010997  HRDC-like superfamily
 IPR011545  DEAD/DEAH box helicase domain
 IPR012337  Ribonuclease H-like superfamily
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR018982  RQC domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR029491  Helicase Helix-turn-helix domain
 IPR032284  ATP-dependent DNA helicase RecQ, zinc-binding domain
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily
 IPR036397  Ribonuclease H superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000723 telomere maintenance IEA
 biological_processGO:0000724 double-strand break repair via homologous recombination IBA
 biological_processGO:0000731 DNA synthesis involved in DNA repair IDA
 biological_processGO:0000732 strand displacement TAS
 biological_processGO:0001302 replicative cell aging IEA
 biological_processGO:0006139 nucleobase-containing compound metabolic process IEA
 biological_processGO:0006259 DNA metabolic process IEA
 biological_processGO:0006260 DNA replication ISS
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006284 base-excision repair IDA
 biological_processGO:0006302 double-strand break repair IMP
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0006979 response to oxidative stress IDA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007568 aging NAS
 biological_processGO:0007569 cell aging IMP
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0009267 cellular response to starvation IDA
 biological_processGO:0010225 response to UV-C IDA
 biological_processGO:0010259 multicellular organism aging IMP
 biological_processGO:0031297 replication fork processing IMP
 biological_processGO:0032508 DNA duplex unwinding IDA
 biological_processGO:0040009 regulation of growth rate IEA
 biological_processGO:0042981 regulation of apoptotic process IGI
 biological_processGO:0044237 cellular metabolic process IEA
 biological_processGO:0044806 G-quadruplex DNA unwinding IEA
 biological_processGO:0051345 positive regulation of hydrolase activity IDA
 biological_processGO:0061820 telomeric D-loop disassembly TAS
 biological_processGO:0071480 cellular response to gamma radiation IDA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090656 t-circle formation TAS
 biological_processGO:0098530 positive regulation of strand invasion IDA
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 biological_processGO:1902570 protein localization to nucleolus IDA
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005657 replication fork IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0032389 MutLalpha complex IDA
 cellular_componentGO:0043005 neuron projection IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000287 magnesium ion binding IDA
 molecular_functionGO:0000400 four-way junction DNA binding IDA
 molecular_functionGO:0000403 Y-form DNA binding IDA
 molecular_functionGO:0000405 bubble DNA binding IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003678 DNA helicase activity IDA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004003 ATP-dependent DNA helicase activity IDA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004527 exonuclease activity IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008026 ATP-dependent helicase activity IEA
 molecular_functionGO:0008408 3"-5" exonuclease activity IDA
 molecular_functionGO:0009378 four-way junction helicase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016887 ATPase activity IDA
 molecular_functionGO:0030145 manganese ion binding IDA
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0043138 3"-5" DNA helicase activity IDA
 molecular_functionGO:0043140 ATP-dependent 3"-5" DNA helicase activity IBA
 molecular_functionGO:0044877 protein-containing complex binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051880 G-quadruplex DNA binding IDA
 molecular_functionGO:0061749 forked DNA-dependent helicase activity IDA
 molecular_functionGO:0061821 telomeric D-loop binding IDA
 molecular_functionGO:0061849 telomeric G-quadruplex DNA binding IC
 molecular_functionGO:0070337 3"-flap-structured DNA binding IDA
 molecular_functionGO:1905773 8-hydroxy-2"-deoxyguanosine DNA binding IDA


Pathways (from Reactome)
Pathway description
SUMOylation of DNA damage response and repair proteins
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)
Resolution of D-loop Structures through Holliday Junction Intermediates
Homologous DNA Pairing and Strand Exchange
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000144 Decreased fertility 
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 HP:0000275 Narrow face 
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 HP:0000444 Beaked nose 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000546 Retinal degeneration 
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 HP:0000765 Abnormality of the thorax "Any abnormality of the thorax (the region of the body formed by the sternum, the thoracic vertebrae and the ribs)." [HPO:curators]
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 HP:0000819 Diabetes mellitus 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000855 Insulin resistance 
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 HP:0000869 Secondary amenorrhea 
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 HP:0000934 Chondrocalcinosis 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001533 Asthenic habitus "Asthenic habitus refers to a slender build with long limbs, an angular profile, and prominent muscles or bones." [HPO:curators]
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 HP:0001595 Hair abnormality 
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 HP:0001601 Laryngomalacia 
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 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001658 Myocardial infarction 
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 HP:0001838 Vertical talus 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002211 White forelock 
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 HP:0002216 Premature graying of hair 
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 HP:0002621 Atherosclerosis "A condition characterized by patchy atheromas or atherosclerotic plaques which develop in the walls of medium-sized and large arteries and can lead to arterial stenosis with reduced or blocked blood flow." [HPO:curators]
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 HP:0002669 Osteogenic sarcoma 
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 HP:0002672 Gastrointestinal carcinoma 
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 HP:0002858 Meningioma 
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 HP:0002860 Squamous cell carcinoma 
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 HP:0002890 Thyroid carcinoma 
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 HP:0003002 Breast cancer 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003777 Pili torti "Pili (from Latin pilus, hair) torti (from Latin tortus, twisted) refers to short and brittle hairs that appear flattened and twisted when viewed through a microscope." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004415 Pulmonary artery stenosis 
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 HP:0005177 Premature arteriosclerosis 
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 HP:0005268 Increased risk of spontaneous abortion 
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 HP:0005328 Progeroid facial appearance 
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007618 Subcutaneous calcification 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008065 Aplasia/Hypoplasia of the skin 
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 HP:0009726 Renal neoplasia "Tumors, malignant or benign, originating in the kidney." [HPO:curators]
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 HP:0010468 Aplasia/Hypoplasia of the testes "Absence or underdevelopment of the testes." [HPO:curators]
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 HP:0010721 Abnormal hair whorl "An abnormal hair whorl (that is, a patch of hair growing in the opposite direction of the rest of the hair)." [HPO:probinson]
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 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
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 HP:0012060 Acral lentiginous melanoma "A type of cutaneous melanoma localized to the palm, sole, or beneath the nail (subungual melanoma). Acral lentiginous melanoma starts as a slowly-enlarging flat patch of discoloured skin and usually displays a size above 6 mm and often several centimetres or more in diameter upon diagnosis and variable pigmentation with a mixutre of colors including brown, and blue-grey, black and red. The surface of the lesion is initially smooth but later in the course may become thicker and irregular, and may ulcerate or bleed." [HPO:probinson]
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 HP:0100242 Sarcoma "The presence of a `sarcoma` (MPATH:551)." [HPO:sdoelken]
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 HP:0100526 Neoplasia of the lungs 
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100615 Ovarian neoplasm "The presence of a `neoplasm` (MPATH:218) the `ovary` (FMA:7209)." [HPO:probinson]
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 HP:0100649 Neoplasia of the oral cavity 
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 HP:0100659 Abnormality of the cerebral vasculature 
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 HP:0100679 Lack of skin elasticity 
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 HP:0100833 Neoplasm of the small intestine "The presence of a `neoplasm` (MPATH:218) of the small intestine." [HPO:probinson]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000136492 BRIP1 / Q9BX63 / BRCA1 interacting protein C-terminal helicase 1  / complex / reaction
 ENSG00000104320 NBN / nibrin / O60934  / reaction / complex
 ENSG00000138376 BARD1 / Q99728 / BRCA1 associated RING domain 1  / reaction / complex
 ENSG00000106399 RPA3 / P35244 / replication protein A3  / complex / reaction
 ENSG00000164053 ATRIP / Q8WXE1 / ATR interacting protein  / complex / reaction
 ENSG00000117748 RPA2 / P15927 / replication protein A2  / reaction / complex
 ENSG00000175054 ATR / Q13535 / ATR serine/threonine kinase  / complex / reaction
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000132383 RPA1 / P27694 / replication protein A1  / reaction / complex
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / complex / reaction
 ENSG00000149311 ATM / Q13315 / ATM serine/threonine kinase  / reaction / complex
 ENSG00000020922 MRE11 / P49959 / MRE11 homolog, double strand break repair nuclease  / complex / reaction
 ENSG00000172977 KAT5 / Q92993 / lysine acetyltransferase 5  / complex / reaction
 ENSG00000101773 RBBP8 / Q99708 / RB binding protein 8, endonuclease  / reaction / complex
 ENSG00000138346 DNA2 / P51530 / DNA replication helicase/nuclease 2  / complex
 ENSG00000012048 BRCA1 / P38398 / BRCA1, DNA repair associated  / reaction / complex
 ENSG00000113522 RAD50 / Q92878 / RAD50 double strand break repair protein  / reaction / complex






 

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