ENSG00000051180


Homo sapiens

Features
Gene ID: ENSG00000051180
  
Biological name :RAD51
  
Synonyms : Q06609 / RAD51 / RAD51 recombinase
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q15.1
Gene start: 40694774
Gene end: 40732339
  
Corresponding Affymetrix probe sets: 205023_at (Human Genome U133 Plus 2.0 Array)   205024_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000433053
Ensembl peptide - ENSP00000432759
Ensembl peptide - ENSP00000433924
Ensembl peptide - ENSP00000454176
Ensembl peptide - ENSP00000436512
Ensembl peptide - ENSP00000267868
Ensembl peptide - ENSP00000372088
Ensembl peptide - ENSP00000406602
Ensembl peptide - ENSP00000431864
Ensembl peptide - ENSP00000431897
NCBI entrez gene - 5888     See in Manteia.
OMIM - 179617
RefSeq - XM_011521862
RefSeq - NM_001164269
RefSeq - NM_002875
RefSeq - NM_133487
RefSeq - XM_006720626
RefSeq - XM_011521857
RefSeq - XM_011521858
RefSeq - XM_011521859
RefSeq - XM_011521860
RefSeq Peptide - NP_597994
RefSeq Peptide - NP_001157741
RefSeq Peptide - NP_002866
swissprot - H0YD61
swissprot - Q06609
swissprot - Q9NZG9
swissprot - E9PI54
swissprot - E9PNT5
swissprot - E9PJ30
Ensembl - ENSG00000051180
  
Related genetic diseases (OMIM): 114480 - {Breast cancer, susceptibility to}, 114480
  614508 - Mirror movements 2, 614508
  617244 - ?Fanconi anemia, complementation group R, 617244
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rad51ENSDARG00000041411Danio rerio
 RAD51ENSGALG00000030313Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC012476.1ENSG0000028539665


Protein motifs (from Interpro)
Interpro ID Name
 IPR003593  AAA+ ATPase domain
 IPR010995  DNA repair Rad51/transcription factor NusA, alpha-helical
 IPR011941  DNA recombination/repair protein Rad51
 IPR013632  DNA recombination and repair protein Rad51-like, C-terminal
 IPR016467  DNA recombination and repair protein, RecA-like
 IPR020587  DNA recombination and repair protein RecA, monomer-monomer interface
 IPR020588  DNA recombination and repair protein RecA-like, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR033925  Rad51/DMC1/RadA


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000722 telomere maintenance via recombination ISS
 biological_processGO:0000724 double-strand break repair via homologous recombination IDA
 biological_processGO:0000730 DNA recombinase assembly IMP
 biological_processGO:0000731 DNA synthesis involved in DNA repair TAS
 biological_processGO:0000732 strand displacement TAS
 biological_processGO:0006259 DNA metabolic process IEA
 biological_processGO:0006268 DNA unwinding involved in DNA replication IDA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006310 DNA recombination TAS
 biological_processGO:0006312 mitotic recombination TAS
 biological_processGO:0006974 cellular response to DNA damage stimulus IMP
 biological_processGO:0007131 reciprocal meiotic recombination TAS
 biological_processGO:0010569 regulation of double-strand break repair via homologous recombination IDA
 biological_processGO:0010833 telomere maintenance via telomere lengthening ISS
 biological_processGO:0031297 replication fork processing IMP
 biological_processGO:0036297 interstrand cross-link repair IMP
 biological_processGO:0042148 strand invasion IBA
 biological_processGO:0051106 positive regulation of DNA ligation IDA
 biological_processGO:0051260 protein homooligomerization IPI
 biological_processGO:0051321 meiotic cell cycle ISS
 biological_processGO:0070192 chromosome organization involved in meiotic cell cycle IBA
 biological_processGO:0070317 negative regulation of G0 to G1 transition TAS
 biological_processGO:0071479 cellular response to ionizing radiation IDA
 biological_processGO:0072757 cellular response to camptothecin IDA
 biological_processGO:1990426 mitotic recombination-dependent replication fork processing IEA
 cellular_componentGO:0000228 nuclear chromosome IDA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IDA
 cellular_componentGO:0000785 chromatin IDA
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0000793 condensed chromosome ISS
 cellular_componentGO:0000794 condensed nuclear chromosome ISS
 cellular_componentGO:0000800 lateral element IDA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0016605 PML body IDA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0035861 site of double-strand break IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0000150 recombinase activity IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000400 four-way junction DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IMP
 molecular_functionGO:0003697 single-stranded DNA binding IMP
 molecular_functionGO:0004520 endodeoxyribonuclease activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0008094 DNA-dependent ATPase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043142 single-stranded DNA-dependent ATPase activity IMP
 molecular_functionGO:0070182 DNA polymerase binding IPI


Pathways (from Reactome)
Pathway description
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)
Resolution of D-loop Structures through Holliday Junction Intermediates
Homologous DNA Pairing and Strand Exchange
Presynaptic phase of homologous DNA pairing and strand exchange
Transcriptional Regulation by E2F6
Meiotic recombination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000027 Azoospermia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000072 Hydroureter "The distention of the ureter with urine." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000268 Dolichocephaly 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000324 Facial asymmetry 
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000453 Choanal atresia "Absence or abnormal closure of the choana (the posterior nasal aperture)." [HPO:curators]
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 HP:0000483 Astigmatism 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000813 Bicornuate uterus 
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 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001199 Triphalangeal thumb "In contrast to the metacarpals 2-5, the first metacarpal is embryologically of phalangeal origin. The thumb normally consists of the first metacarpal and a proximal and distal phalanx. All other digits have an additional middle phalanx. This term applies if the thumb has an accessory phalanx, leading to a digit like appearance of the thumb." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001335 Mirror hand movements (bimanual synkinesia) 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001392 Abnormality of the liver 
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 HP:0001510 Growth retardation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001562 Oligohydramnios 
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001646 Abnormality of the aortic valve "Any abnormality of the `aortic valve` (FMA:7236)." [HPO:curators]
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 HP:0001679 Abnormalities of the aorta 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001824 Weight loss 
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 HP:0001873 Thrombocytopenia 
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 HP:0001882 Leukopenia 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002245 Meckel diverticulum 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002312 Clumsiness 
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002492 Abnormality of the corticospinal tract "Abnormality of the corticospinal tract, which is the chief element of the pyramidal system (the principle motor tract) and is the only direct connection between the cerebrum and the spinal cord." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002823 Abnormality of the femur "Abnormality of the femur (i.e., the thigh bone)." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0002861 Malignant melanoma "A malignant skin tumor of originating from melanocytes, pigment cells normally present in the epidermis and sometimes in the dermis." [HPO:curators]
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 HP:0002863 Myelodysplasia 
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 HP:0002894 Pancreatic cancer 
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 HP:0002949 Fused cervical vertebrae 
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 HP:0003002 Breast cancer 
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 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
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 HP:0003220 Tendency to chromosomal breakage "A type of chromosomal aberration characterized by an increased susceptibility to chromosomal breakage induced by treatment of cultured lymphocytes with agents such as chemical mutagens, irradiation, and alkylating agents." [HPO:curators]
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003388 Easy fatigability 
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 HP:0003829 Incomplete penetrance 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
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 HP:0005344 Abnormality of the carotid arteries 
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 HP:0005522 Anemia, pyridoxine-responsive 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006265 Aplasia/Hypoplasia of fingers "Small/hypoplastic or absent/aplastic fingers." [HPO:curators]
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 HP:0006501 Aplasia/Hypoplasia of the radius "A small/hypoplastic or absent/aplastic radius." [HPO:curators]
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 HP:0006824 Cranial nerve paralysis 
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 HP:0007010 Poor fine motor coordination 
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 HP:0007400 Irregular hyperpigmentation 
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 HP:0007565 Multiple cafe-au-lait spots 
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 HP:0007874 Almond-shaped palpebral fissures 
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 HP:0008053 Aplasia/Hypoplasia of the iris "Absence or underdevelopment of the iris." [HPO:curators]
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 HP:0008572 External ear malformation 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0010293 Aplasia/Hypoplasia of the uvula "Underdevelopment or absence of the uvula." [HPO:curators]
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 HP:0010469 Aplasia of the testes "Absence of the testes." [HPO:curators]
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 HP:0011027 Abnormality of the fallopian tube "An abnormality of the `fallopian tube` (FMA:18245)." [HPO:probinson]
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 HP:0012041 Decreased fertility in males 
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 HP:0012125 Prostate cancer "A cancer of the `prostate` (FMA:9600)." [HPO:probinson]
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 HP:0012745 Short palpebral fissure "Distance between the medial and lateral canthi is more than 2 SD below the mean for age (objective); or, apparently reduced length of the palpebral fissures." [pmid:19125427]
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 HP:0025101 Dysgenesis of the hippocampus "Structural abnormality of the hippocampus related to defective development." []
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 HP:0030406 Primary peritoneal carcinoma "A type of cancer that originates in the peritoneam. It is to be distinguished from metastatic cancer of the peritoneum. Peritoneal cancer can occur anywhere in the abdominal space, and affects the surface of organs contained inside the peritoneum." [HPO:probinson]
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 HP:0100021 Cerebral paralysis "Cerebral palsy describes a group of permanent disorders of the development of movement and posture, causing activity limitation, that are attributed to nonprogressive disturbances that occurred in the developing fetal or infant brain. The motor disorders of cerebral palsy are often accompanied by disturbances of sensation, perception, cognition, communication, and behaviour, by epilepsy, and by secondary musculoskeletal problems." [HPO:sdoelken]
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 HP:0100026 Arteriovenous malformations 
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 HP:0100542 Abnormal localization of kidneys 
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 HP:0100587 Abnormality of the preputium 
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 HP:0100615 Ovarian neoplasm "The presence of a `neoplasm` (MPATH:218) the `ovary` (FMA:7209)." [HPO:probinson]
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 HP:0100760 Clubbing of toes "Terminal broadening of the toes (distal phalanges of the toes)." [HPO:sdoelken]
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 HP:0100867 Duodenal stenosis "The narrowing or partial blockage of a portion of the duodenum." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000012061 ERCC1 / P07992 / ERCC excision repair 1, endonuclease non-catalytic subunit  / reaction
 ENSG00000111247 Q96B01 / RAD51AP1 / RAD51 associated protein 1  / complex
 ENSG00000002016 RAD52 / P43351 / RAD52 homolog, DNA repair protein  / complex / reaction
 ENSG00000083093 PALB2 / Q86YC2 / partner and localizer of BRCA2  / complex
 ENSG00000138376 BARD1 / Q99728 / BRCA1 associated RING domain 1  / complex
 ENSG00000051180 RAD51 / Q06609 / RAD51 recombinase  / complex / reaction
 ENSG00000175595 ERCC4 / Q92889 / ERCC excision repair 4, endonuclease catalytic subunit  / reaction
 ENSG00000149554 CHEK1 / O14757 / checkpoint kinase 1  / reaction
 ENSG00000101773 RBBP8 / Q99708 / RB binding protein 8, endonuclease  / complex
 ENSG00000012048 BRCA1 / P38398 / BRCA1, DNA repair associated  / complex
 ENSG00000139618 BRCA2 / P51587 / BRCA2, DNA repair associated  / reaction / complex






 

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