ENSG00000012061


Homo sapiens

Features
Gene ID: ENSG00000012061
  
Biological name :ERCC1
  
Synonyms : ERCC1 / ERCC excision repair 1, endonuclease non-catalytic subunit / P07992
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: q13.32
Gene start: 45407333
Gene end: 45478828
  
Corresponding Affymetrix probe sets: 203719_at (Human Genome U133 Plus 2.0 Array)   203720_s_at (Human Genome U133 Plus 2.0 Array)   228131_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000468158
Ensembl peptide - ENSP00000468119
Ensembl peptide - ENSP00000468548
Ensembl peptide - ENSP00000013807
Ensembl peptide - ENSP00000300853
Ensembl peptide - ENSP00000345203
Ensembl peptide - ENSP00000394875
Ensembl peptide - ENSP00000465225
Ensembl peptide - ENSP00000465354
Ensembl peptide - ENSP00000465524
Ensembl peptide - ENSP00000466644
Ensembl peptide - ENSP00000467183
Ensembl peptide - ENSP00000468035
NCBI entrez gene - 2067     See in Manteia.
OMIM - 126380
RefSeq - XM_017026466
RefSeq - NM_202001
RefSeq - XM_005258634
RefSeq - XM_005258635
RefSeq - XM_005258636
RefSeq - XM_005258637
RefSeq - XM_011526610
RefSeq - XM_017026459
RefSeq - XM_017026460
RefSeq - XM_017026461
RefSeq - XM_017026462
RefSeq - XM_017026463
RefSeq - XM_017026464
RefSeq - XM_017026465
RefSeq - NM_001166049
RefSeq - NM_001983
RefSeq Peptide - NP_973730
RefSeq Peptide - NP_001159521
RefSeq Peptide - NP_001974
swissprot - K7EMT9
swissprot - K7EP14
swissprot - K7ER60
swissprot - K7EJL2
swissprot - K7ES46
swissprot - P07992
swissprot - A0A024R0Q6
swissprot - K7ER89
swissprot - K7EJW9
swissprot - K7EK97
Ensembl - ENSG00000012061
  
Related genetic diseases (OMIM): 610758 - Cerebrooculofacioskeletal syndrome 4, 610758
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ercc1ENSDARG00000031680Danio rerio
 Ercc1ENSMUSG00000003549Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000445  Helix-hairpin-helix motif
 IPR004579  ERCC1/RAD10/SWI10 family
 IPR010994  RuvA domain 2-like
 IPR011335  Restriction endonuclease type II-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000710 meiotic mismatch repair IBA
 biological_processGO:0000720 pyrimidine dimer repair by nucleotide-excision repair IEA
 biological_processGO:0001302 replicative cell aging IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006283 transcription-coupled nucleotide-excision repair TAS
 biological_processGO:0006289 nucleotide-excision repair IGI
 biological_processGO:0006293 nucleotide-excision repair, preincision complex stabilization TAS
 biological_processGO:0006295 nucleotide-excision repair, DNA incision, 3"-to lesion TAS
 biological_processGO:0006296 nucleotide-excision repair, DNA incision, 5"-to lesion TAS
 biological_processGO:0006302 double-strand break repair IEA
 biological_processGO:0006303 double-strand break repair via nonhomologous end joining IMP
 biological_processGO:0006310 DNA recombination IGI
 biological_processGO:0006312 mitotic recombination IMP
 biological_processGO:0006949 syncytium formation IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0006979 response to oxidative stress IMP
 biological_processGO:0007281 germ cell development IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007584 response to nutrient IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0009650 UV protection IEA
 biological_processGO:0009744 response to sucrose IEA
 biological_processGO:0010165 response to X-ray IEA
 biological_processGO:0010259 multicellular organism aging IEA
 biological_processGO:0032205 negative regulation of telomere maintenance IMP
 biological_processGO:0033683 nucleotide-excision repair, DNA incision TAS
 biological_processGO:0035166 post-embryonic hemopoiesis IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0035902 response to immobilization stress IEA
 biological_processGO:0036297 interstrand cross-link repair IEA
 biological_processGO:0045190 isotype switching IEA
 biological_processGO:0046686 response to cadmium ion IEA
 biological_processGO:0048468 cell development IEA
 biological_processGO:0048477 oogenesis IEA
 biological_processGO:0048568 embryonic organ development IEA
 biological_processGO:0051276 chromosome organization IEA
 biological_processGO:0061819 telomeric DNA-containing double minutes formation IMP
 biological_processGO:0070911 global genome nucleotide-excision repair TAS
 biological_processGO:0070914 UV-damage excision repair IBA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090656 t-circle formation IEA
 biological_processGO:1904431 positive regulation of t-circle formation IEA
 biological_processGO:1905765 negative regulation of protection from non-homologous end joining at telomere IMP
 cellular_componentGO:0000109 nucleotide-excision repair complex IDA
 cellular_componentGO:0000110 nucleotide-excision repair factor 1 complex IDA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0070522 ERCC4-ERCC1 complex IDA
 molecular_functionGO:0000014 single-stranded DNA endodeoxyribonuclease activity IDA
 molecular_functionGO:0001094 TFIID-class transcription factor binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003684 damaged DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:1990599 3" overhang single-stranded DNA endodeoxyribonuclease activity IMP


Pathways (from Reactome)
Pathway description
HDR through Single Strand Annealing (SSA)
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Fanconi Anemia Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000232 Everted lower lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000322 Short philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000490 Deep set eyes 
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 HP:0000505 Impaired vision 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001181 Adducted thumbs 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001315 Reduced reflexes 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001522 Death in infancy 
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 HP:0001531 Failure to thrive in infancy 
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 HP:0001838 Vertical talus 
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 HP:0001883 Talipes 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002827 Dislocated hips 
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 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
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 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
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 HP:0003100 Thin long bones 
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 HP:0003577 Onset at birth 
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 HP:0003828 Variable expressivity 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005105 Abnormal nasal morphology 
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 HP:0005458 Obliterated fontanelles "Normally, the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior fontanelle closes by about the middle of the second year. This term refers to the situation in which the fontanelles close at an inappropriately early time point." [HPO:curators]
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 HP:0005487 Prominent metopic suture "A prominent persistent frontal suture (metopic suture)." [HPO:curators]
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 HP:0005830 Partial flexion contractures of fingers and toes 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007633 Bilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of both eyes." [HPO:curators]
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0009879 Cortical gyral simplification "An abnormal reduction of the number and complexity of the pattern of gyrations of the cerebral cortex." [HPO:curators]
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000002016 RAD52 / P43351 / RAD52 homolog, DNA repair protein  / reaction
 ENSG00000134899 ERCC5 / P28715 / ERCC excision repair 5, endonuclease  / reaction / complex
 ENSG00000106399 RPA3 / P35244 / replication protein A3  / complex / reaction
 ENSG00000175595 ERCC4 / Q92889 / ERCC excision repair 4, endonuclease catalytic subunit  / complex / reaction
 ENSG00000132383 RPA1 / P27694 / replication protein A1  / reaction / complex
 ENSG00000051180 RAD51 / Q06609 / RAD51 recombinase  / reaction
 ENSG00000117748 RPA2 / P15927 / replication protein A2  / reaction / complex
 ENSG00000123552 USP45 / Q70EL2 / ubiquitin specific peptidase 45  / reaction






 

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