ENSG00000139351


Homo sapiens

Features
Gene ID: ENSG00000139351
  
Biological name :SYCP3
  
Synonyms : Q8IZU3 / SYCP3 / synaptonemal complex protein 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q23.2
Gene start: 101728648
Gene end: 101739472
  
Corresponding Affymetrix probe sets: 1553599_a_at (Human Genome U133 Plus 2.0 Array)   241861_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000376658
Ensembl peptide - ENSP00000266743
Ensembl peptide - ENSP00000376655
NCBI entrez gene - 50511     See in Manteia.
OMIM - 604759
RefSeq - XM_017019368
RefSeq - NM_001177948
RefSeq - NM_001177949
RefSeq - NM_153694
RefSeq - XM_005268924
RefSeq - XM_005268925
RefSeq - XM_005268926
RefSeq - XM_005268927
RefSeq - XM_011538421
RefSeq - XM_005268922
RefSeq Peptide - NP_001171419
RefSeq Peptide - NP_001171420
RefSeq Peptide - NP_710161
swissprot - Q8IZU3
swissprot - A0A024RBF8
Ensembl - ENSG00000139351
  
Related genetic diseases (OMIM): 270960 - Pregnancy loss, recurrent, 4, 270960
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sycp3ENSDARG00000013438Danio rerio
 SYCP3ENSGALG00000012766Gallus gallus
 Sycp3ENSMUSG00000020059Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006888  XLR/SYCP3/FAM9 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007141 male meiosis I NAS
 biological_processGO:0035093 spermatogenesis, exchange of chromosomal proteins IMP
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051321 meiotic cell cycle IBA
 cellular_componentGO:0000775 chromosome, centromeric region ISS
 cellular_componentGO:0000795 synaptonemal complex IDA
 cellular_componentGO:0000800 lateral element IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Meiotic synapsis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000027 Azoospermia 
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 HP:0000837 Elevated gonadotropins 
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 HP:0001939 Metabolism abnormality 
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 HP:0008734 Decreased testicular size 
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 HP:0011961 Non-obstructive azoospermia "Absence of any measurable level of sperm in his semen, resulting from a defect in the production of spermatozoa in the testes. Can be differentiated from obstructive azoospermia on the basis of testicular biopsy." [HPO:probinson, pmid:20514278]
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 HP:0011962 Obstructive azoospermia "Absence of any measurable level of sperm in his semen, resulting from post-testicular obstruction or retrograde ejaculation. Can be differentiated from obstructive azoospermia on the basis of testicular biopsy." [HPO:probinson, pmid:20514278]
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 HP:0200067 Recurrent spontaneous abortion 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / complex
 ENSG00000188486 H2AFX / P16104 / H2A histone family member X  / complex
 ENSG00000168148 Q16695 / HIST3H3 / histone cluster 3 H3  / complex
 ENSG00000012048 BRCA1 / P38398 / BRCA1, DNA repair associated  / complex / reaction
 ENSG00000196074 SYCP2 / Q9BX26 / synaptonemal complex protein 2  / complex
 ENSG00000175054 ATR / Q13535 / ATR serine/threonine kinase  / complex / reaction






 

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