ENSG00000094804


Homo sapiens

Features
Gene ID: ENSG00000094804
  
Biological name :CDC6
  
Synonyms : CDC6 / cell division cycle 6 / Q99741
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q21.2
Gene start: 40287633
Gene end: 40304657
  
Corresponding Affymetrix probe sets: 203967_at (Human Genome U133 Plus 2.0 Array)   203968_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464047
Ensembl peptide - ENSP00000209728
Ensembl peptide - ENSP00000463004
Ensembl peptide - ENSP00000463635
NCBI entrez gene - 990     See in Manteia.
OMIM - 602627
RefSeq - XM_011525542
RefSeq - NM_001254
RefSeq - XM_011525541
RefSeq Peptide - NP_001245
swissprot - J3QR52
swissprot - A0A024R1S2
swissprot - Q99741
swissprot - J3KTI7
swissprot - J3QLN7
Ensembl - ENSG00000094804
  
Related genetic diseases (OMIM): 613805 - ?Meier-Gorlin syndrome 5, 613805
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdc6ENSDARG00000009942Danio rerio
 CDC6ENSGALG00000036519Gallus gallus
 Cdc6ENSMUSG00000017499Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ORC1 / Q13415 / origin recognition complex subunit 1ENSG0000008584025


Protein motifs (from Interpro)
Interpro ID Name
 IPR003593  AAA+ ATPase domain
 IPR015163  Cdc6, C-terminal
 IPR016314  Cell division protein Cdc6/18
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000076 DNA replication checkpoint TAS
 biological_processGO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity TAS
 biological_processGO:0000082 G1/S transition of mitotic cell cycle TAS
 biological_processGO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle TAS
 biological_processGO:0000278 mitotic cell cycle IMP
 biological_processGO:0006260 DNA replication TAS
 biological_processGO:0006270 DNA replication initiation IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007089 traversing start control point of mitotic cell cycle TAS
 biological_processGO:0008156 negative regulation of DNA replication TAS
 biological_processGO:0008285 negative regulation of cell proliferation TAS
 biological_processGO:0030071 regulation of mitotic metaphase/anaphase transition IMP
 biological_processGO:0032467 positive regulation of cytokinesis IMP
 biological_processGO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IEA
 biological_processGO:0048146 positive regulation of fibroblast proliferation IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051984 positive regulation of chromosome segregation IDA
 biological_processGO:1904117 cellular response to vasopressin IEA
 biological_processGO:1904385 cellular response to angiotensin IEA
 cellular_componentGO:0000922 spindle pole IDA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0051233 spindle midzone IDA
 molecular_functionGO:0000166 nucleotide binding TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0019900 kinase binding IPI


Pathways (from Reactome)
Pathway description
Transcription of E2F targets under negative control by DREAM complex
Activation of ATR in response to replication stress
Activation of E2F1 target genes at G1/S
CDC6 association with the ORC:origin complex
CDT1 association with the CDC6:ORC:origin complex
Assembly of the pre-replicative complex
Orc1 removal from chromatin
Activation of the pre-replicative complex
CDK-mediated phosphorylation and removal of Cdc6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000039 Epispadias "Displacement of the urethral opening on the dorsal (superior) surface of the penis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000059 Hypoplastic labia majora 
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 HP:0000060 Hypoplastic clitoris 
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 HP:0000064 Hypoplastic labia minora 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000176 Submucous cleft palate "A cleft palate that is covered by the mucous membrane of the roof of the mouth, which can make the cleft more difficult to observe upon physical examination. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue. Hard-palate submucous clefts are characterized by bony defects in the midline of the bony palate. It may be possible to detect a submucous cleft palate upon palpation as a notch in the bony palate." [HPO:curators, pmid:19779505]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000325 Triangular facies 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000385 Hypoplastic ear lobes 
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001328 Learning disability 
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002098 Respiratory distress 
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002878 Early respiratory failure 
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 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
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 HP:0003090 Small capital femoral epiphyses 
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 HP:0003100 Thin long bones 
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0003561 Birth length <3rd percentile 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0005487 Prominent metopic suture "A prominent persistent frontal suture (metopic suture)." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006361 Irregular femoral epiphyses 
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 HP:0006443 Patellar aplasia "Absence of the patella." [HPO:curators]
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 HP:0006660 Aplastic clavicles 
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 HP:0008551 Underdeveloped ears 
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 HP:0008665 Hypertrophic clitoris 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009892 Anotia "Complete absence of the auricle (external ear). The skin of the cheek passes smoothly over the aural area without definite elevation or depression." [HPO:curators]
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 HP:0009939 Mandibular aplasia "Absence of the mandible." [HPO:curators]
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 HP:0011267 Microtia, third degree "Presence of some auricular structures, but none of these structures conform to recognized ear components." [pmid:19152421]
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 HP:0011342 Mild global developmental delay "A mild delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100783 Breast aplasia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000204086 RPA4 / Q13156 / replication protein A4  / reaction / complex
 ENSG00000106399 RPA3 / P35244 / replication protein A3  / reaction / complex
 ENSG00000117748 RPA2 / P15927 / replication protein A2  / complex / reaction
 ENSG00000167513 CDT1 / Q9H211 / chromatin licensing and DNA replication factor 1  / reaction / complex
 ENSG00000132383 RPA1 / P27694 / replication protein A1  / reaction / complex
 ENSG00000092853 CLSPN / Q9HAW4 / claspin  / reaction / complex
 ENSG00000097046 CDC7 / O00311 / cell division cycle 7  / reaction / complex
 ENSG00000006634 DBF4 / Q9UBU7 / DBF4 zinc finger  / complex / reaction
 ENSG00000105173 CCNE1 / P24864 / cyclin E1  / reaction
 ENSG00000123374 CDK2 / P24941 / cyclin dependent kinase 2  / reaction / complex
 ENSG00000093009 CDC45 / O75419 / cell division cycle 45  / reaction / complex
 ENSG00000175305 CCNE2 / O96020 / cyclin E2  / reaction
 ENSG00000175054 ATR / Q13535 / ATR serine/threonine kinase  / reaction
 ENSG00000065328 MCM10 / Q7L590 / minichromosome maintenance 10 replication initiation factor  / reaction / complex






 

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