ENSG00000167513


Homo sapiens

Features
Gene ID: ENSG00000167513
  
Biological name :CDT1
  
Synonyms : CDT1 / chromatin licensing and DNA replication factor 1 / Q9H211
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q24.3
Gene start: 88803213
Gene end: 88809258
  
Corresponding Affymetrix probe sets: 209832_s_at (Human Genome U133 Plus 2.0 Array)   228868_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000301019
Ensembl peptide - ENSP00000456926
NCBI entrez gene - 81620     See in Manteia.
OMIM - 605525
RefSeq - NM_030928
RefSeq Peptide - NP_112190
swissprot - Q9H211
swissprot - H3BSY1
Ensembl - ENSG00000167513
  
Related genetic diseases (OMIM): 613804 - Meier-Gorlin syndrome 4, 613804
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdt1ENSDARG00000051854Danio rerio
 CDT1ENSGALG00000013784Gallus gallus
 Cdt1ENSMUSG00000006585Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR014939  CDT1 Geminin-binding domain-like
 IPR032054  DNA replication factor Cdt1, C-terminal
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000076 DNA replication checkpoint IEA
 biological_processGO:0000082 G1/S transition of mitotic cell cycle TAS
 biological_processGO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle TAS
 biological_processGO:0000278 mitotic cell cycle IMP
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007059 chromosome segregation IMP
 biological_processGO:0030174 regulation of DNA-dependent DNA replication initiation IEA
 biological_processGO:0031334 positive regulation of protein complex assembly IMP
 biological_processGO:0033044 regulation of chromosome organization IMP
 biological_processGO:0033262 regulation of nuclear cell cycle DNA replication IEA
 biological_processGO:0035563 positive regulation of chromatin binding IDA
 biological_processGO:0051301 cell division IMP
 biological_processGO:0051315 attachment of mitotic spindle microtubules to kinetochore IMP
 biological_processGO:0051383 kinetochore organization IMP
 biological_processGO:0071163 DNA replication preinitiation complex assembly IDA
 biological_processGO:0072708 response to sorbitol IDA
 biological_processGO:1902426 deactivation of mitotic spindle assembly checkpoint IMP
 biological_processGO:1902595 regulation of DNA replication origin binding IDA
 biological_processGO:1905341 negative regulation of protein localization to kinetochore IMP
 biological_processGO:1905342 positive regulation of protein localization to kinetochore IMP
 biological_processGO:2000105 positive regulation of DNA-dependent DNA replication IDA
 biological_processGO:2001178 positive regulation of mediator complex assembly IDA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000776 kinetochore IDA
 cellular_componentGO:0000777 condensed chromosome kinetochore IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Activation of E2F1 target genes at G1/S
CDT1 association with the CDC6:ORC:origin complex
Assembly of the pre-replicative complex
Orc1 removal from chromatin
Activation of the pre-replicative complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000039 Epispadias "Displacement of the urethral opening on the dorsal (superior) surface of the penis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000059 Hypoplastic labia majora 
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 HP:0000060 Hypoplastic clitoris 
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 HP:0000064 Hypoplastic labia minora 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000176 Submucous cleft palate "A cleft palate that is covered by the mucous membrane of the roof of the mouth, which can make the cleft more difficult to observe upon physical examination. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue. Hard-palate submucous clefts are characterized by bony defects in the midline of the bony palate. It may be possible to detect a submucous cleft palate upon palpation as a notch in the bony palate." [HPO:curators, pmid:19779505]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000895 Hooked clavicles 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0002097 Emphysema 
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 HP:0002098 Respiratory distress 
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002816 Genu recurvatum 
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 HP:0002878 Early respiratory failure 
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 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
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 HP:0003100 Thin long bones 
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 HP:0003187 Breast hypoplasia 
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0003561 Birth length <3rd percentile 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006443 Patellar aplasia "Absence of the patella." [HPO:curators]
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 HP:0006660 Aplastic clavicles 
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 HP:0008551 Underdeveloped ears 
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 HP:0008665 Hypertrophic clitoris 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009892 Anotia "Complete absence of the auricle (external ear). The skin of the cheek passes smoothly over the aural area without definite elevation or depression." [HPO:curators]
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 HP:0009939 Mandibular aplasia "Absence of the mandible." [HPO:curators]
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 HP:0011267 Microtia, third degree "Presence of some auricular structures, but none of these structures conform to recognized ear components." [pmid:19152421]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100783 Breast aplasia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000094804 CDC6 / Q99741 / cell division cycle 6  / reaction / complex
 ENSG00000123374 CDK2 / P24941 / cyclin dependent kinase 2  / reaction
 ENSG00000112312 GMNN / O75496 / geminin, DNA replication inhibitor  / complex / reaction
 ENSG00000065328 MCM10 / Q7L590 / minichromosome maintenance 10 replication initiation factor  / complex / reaction






 

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