ENSG00000152457


Homo sapiens

Features
Gene ID: ENSG00000152457
  
Biological name :DCLRE1C
  
Synonyms : DCLRE1C / DNA cross-link repair 1C / Q96SD1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: p13
Gene start: 14897359
Gene end: 14954432
  
Corresponding Affymetrix probe sets: 219678_x_at (Human Genome U133 Plus 2.0 Array)   222233_s_at (Human Genome U133 Plus 2.0 Array)   235478_at (Human Genome U133 Plus 2.0 Array)   242927_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000391428
Ensembl peptide - ENSP00000380030
Ensembl peptide - ENSP00000413180
Ensembl peptide - ENSP00000350349
Ensembl peptide - ENSP00000367487
Ensembl peptide - ENSP00000367488
Ensembl peptide - ENSP00000367492
Ensembl peptide - ENSP00000367496
Ensembl peptide - ENSP00000367502
Ensembl peptide - ENSP00000367503
Ensembl peptide - ENSP00000367506
Ensembl peptide - ENSP00000367527
Ensembl peptide - ENSP00000367538
NCBI entrez gene - 64421     See in Manteia.
OMIM - 605988
RefSeq - XM_017016560
RefSeq - NM_001033855
RefSeq - NM_001033857
RefSeq - NM_001033858
RefSeq - NM_001289076
RefSeq - NM_001289077
RefSeq - NM_001289078
RefSeq - NM_001289079
RefSeq - NM_022487
RefSeq - XM_006717491
RefSeq - XM_011519616
RefSeq - XM_011519617
RefSeq - XM_011519619
RefSeq - XM_011519620
RefSeq - XM_011519621
RefSeq - XM_017016556
RefSeq - XM_017016557
RefSeq - XM_017016558
RefSeq - XM_017016559
RefSeq Peptide - NP_001276007
RefSeq Peptide - NP_001276008
RefSeq Peptide - NP_071932
RefSeq Peptide - NP_001029027
RefSeq Peptide - NP_001029029
RefSeq Peptide - NP_001029030
RefSeq Peptide - NP_001276005
RefSeq Peptide - NP_001276006
swissprot - X6R9W9
swissprot - X6RJV5
swissprot - B3KSJ7
swissprot - Q96SD1
swissprot - X6RCQ3
Ensembl - ENSG00000152457
  
Related genetic diseases (OMIM): 602450 - Severe combined immunodeficiency, Athabascan type, 602450
  603554 - Omenn syndrome, 603554
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5RGE5ENSDARG00000045704Danio rerio
 DCLRE1CENSGALG00000013926Gallus gallus
 Q8K4J0ENSMUSG00000026648Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H816 / DCLRE1B / DNA cross-link repair 1BENSG0000011865518
Q6PJP8 / DCLRE1A / DNA cross-link repair 1AENSG0000019892413


Protein motifs (from Interpro)
Interpro ID Name
 IPR001279  Metallo-beta-lactamase
 IPR011084  DNA repair metallo-beta-lactamase
 IPR036866  Ribonuclease Z/Hydroxyacylglutathione hydrolase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000723 telomere maintenance IEA
 biological_processGO:0002250 adaptive immune response IEA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006302 double-strand break repair IEA
 biological_processGO:0006303 double-strand break repair via nonhomologous end joining IBA
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0010212 response to ionizing radiation IEA
 biological_processGO:0030183 B cell differentiation IEA
 biological_processGO:0031848 protection from non-homologous end joining at telomere IBA
 biological_processGO:0033151 V(D)J recombination IEA
 biological_processGO:0036297 interstrand cross-link repair IBA
 biological_processGO:0051276 chromosome organization IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0070419 nonhomologous end joining complex IDA
 molecular_functionGO:0000014 single-stranded DNA endodeoxyribonuclease activity IDA
 molecular_functionGO:0003684 damaged DNA binding IBA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity TAS
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008409 5"-3" exonuclease activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0035312 5"-3" exodeoxyribonuclease activity IBA


Pathways (from Reactome)
Pathway description
Nonhomologous End-Joining (NHEJ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000100 Nephrotic syndrome 
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 HP:0000155 Oral ulcers 
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 HP:0000388 Otitis media 
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 HP:0000778 Thymus hypoplasia "Underdevelopment of the thymus." [HPO:curators]
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 HP:0000821 Hypothyroidism 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000958 Dry skin 
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001019 Erythroderma "An inflammatory exfoliative dermatosis involving nearly all of the surface of the skin. Erythroderma develops suddenly. A patchy erythema may generalize and spread to affect most of the skin. Scaling may appear in 2-6 days and be accompanied by hot, red, dry skin, malaise, and fever." [HPO:probinson]
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 HP:0001072 Thickened skin 
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 HP:0001508 Failure to thrive 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001831 Brachydactyly (feet) 
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 HP:0001873 Thrombocytopenia 
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 HP:0001880 Eosinophilia "Increased count of eosinophile granulocytes in the blood." [HPO:sdoelken]
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 HP:0001903 Anemia 
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 HP:0001945 Fever 
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 HP:0002014 Diarrhea 
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 HP:0002028 Chronic diarrhea 
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 HP:0002090 Pneumonia 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002718 Recurrent bacterial infections 
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 HP:0002732 Small lymph nodes 
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 HP:0002788 Recurrent upper respiratory tract infections 
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 HP:0002841 Fungal infections, recurrent 
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 HP:0002960 Autoimmune disease 
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 HP:0003075 Hypoproteinemia 
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 HP:0003139 Panhypogammaglobulinemia 
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 HP:0003249 Genital ulcers 
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 HP:0003812 Phenotypic variability 
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 HP:0004332 Abnormality of lymphocytes 
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 HP:0004429 Recurrent viral infections 
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 HP:0004430 Severe combined immunodeficiency "Severe combine immunodeficiency (SCID) is a primary immune deficiency that is characterized by a severe defect in both the T- and B-lymphocyte systems." [HPO:curators]
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 HP:0005359 Absent or small dysplastic thymus 
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 HP:0005365 Absent peripheral blood B cells 
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 HP:0007549 Desquamation of skin soon after birth 
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 HP:0030813 Absent tonsils "Lack of observable tonsillar tissue." [] {comment="HPO:probinson"}
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 HP:0100646 Thyroiditis "`Inflammation` (MPATH:212) of the `thyroid gland` (FMA:9603)." [HPO:probinson]
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 HP:0100806 Sepsis 
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 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000152422 XRCC4 / Q13426 / X-ray repair cross complementing 4  / reaction
 ENSG00000253729 PRKDC / P78527 / protein kinase, DNA-activated, catalytic polypeptide  / complex / reaction
 ENSG00000196419 XRCC6 / P12956 / X-ray repair cross complementing 6  / complex / reaction
 ENSG00000174405 LIG4 / P49917 / DNA ligase 4  / reaction
 ENSG00000188486 H2AFX / P16104 / H2A histone family member X  / reaction / complex
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / complex / reaction
 ENSG00000080345 RIF1 / Q5UIP0 / replication timing regulatory factor 1  / complex / reaction
 ENSG00000128731 HERC2 / O95714 / HECT and RLD domain containing E3 ubiquitin protein ligase 2  / reaction / complex
 ENSG00000067369 Q12888 / TP53BP1 / tumor protein p53 binding protein 1  / reaction / complex
 ENSG00000105229 PIAS4 / Q8N2W9 / protein inhibitor of activated STAT 4  / reaction / complex
 ENSG00000079246 XRCC5 / P13010 / X-ray repair cross complementing 5  / complex / reaction
 ENSG00000112130 RNF8 / O76064 / ring finger protein 8  / reaction / complex
 ENSG00000122678 POLM / Q9NP87 / DNA polymerase mu  / reaction
 ENSG00000168148 Q16695 / HIST3H3 / histone cluster 3 H3  / reaction / complex
 ENSG00000137337 MDC1 / Q14676 / mediator of DNA damage checkpoint 1  / reaction / complex
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / complex / reaction
 ENSG00000177889 UBE2N / P61088 / ubiquitin conjugating enzyme E2 N  / complex / reaction
 ENSG00000109685 NSD2 / O96028 / nuclear receptor binding SET domain protein 2  / complex / reaction
 ENSG00000169139 Q15819 / UBE2V2 / ubiquitin conjugating enzyme E2 V2  / complex / reaction
 ENSG00000113522 RAD50 / Q92878 / RAD50 double strand break repair protein  / complex / reaction
 ENSG00000104320 NBN / nibrin / O60934  / reaction / complex
 ENSG00000172977 KAT5 / Q92993 / lysine acetyltransferase 5  / reaction / complex
 ENSG00000149311 ATM / Q13315 / ATM serine/threonine kinase  / reaction / complex
 ENSG00000020922 MRE11 / P49959 / MRE11 homolog, double strand break repair nuclease  / reaction / complex
 ENSG00000163961 Q8IYW5 / RNF168 / ring finger protein 168  / reaction / complex
 ENSG00000166169 POLL / Q9UGP5 / DNA polymerase lambda  / reaction
 ENSG00000157212 PAXIP1 / Q6ZW49 / PAX interacting protein 1  / reaction / complex
 ENSG00000187736 NHEJ1 / Q9H9Q4 / non-homologous end joining factor 1  / reaction






 

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