ENSG00000166311


Homo sapiens

Features
Gene ID: ENSG00000166311
  
Biological name :SMPD1
  
Synonyms : P17405 / SMPD1 / sphingomyelin phosphodiesterase 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: p15.4
Gene start: 6390431
Gene end: 6394998
  
Corresponding Affymetrix probe sets: 209420_s_at (Human Genome U133 Plus 2.0 Array)   216230_x_at (Human Genome U133 Plus 2.0 Array)   217171_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000434353
Ensembl peptide - ENSP00000432625
Ensembl peptide - ENSP00000435350
Ensembl peptide - ENSP00000436278
Ensembl peptide - ENSP00000435950
Ensembl peptide - ENSP00000340409
Ensembl peptide - ENSP00000431479
NCBI entrez gene - 6609     See in Manteia.
OMIM - 607608
RefSeq - XM_011520304
RefSeq - NM_000543
RefSeq - NM_001007593
RefSeq - NM_001318087
RefSeq - NM_001318088
RefSeq - XM_011520303
RefSeq Peptide - NP_001305017
RefSeq Peptide - NP_000534
RefSeq Peptide - NP_001007594
RefSeq Peptide - NP_001305016
swissprot - H0YEP5
swissprot - E9PQT3
swissprot - E9PPK6
swissprot - P17405
swissprot - E9PL59
swissprot - G3V1E1
Ensembl - ENSG00000166311
  
Related genetic diseases (OMIM): 257200 - Niemann-Pick disease, type A, 257200
  607616 - Niemann-Pick disease, type B, 607616
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smpd1ENSDARG00000076121Danio rerio
 SMPD1ENSGALG00000036106Gallus gallus
 Smpd1ENSMUSG00000037049Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q92485 / SMPDL3B / sphingomyelin phosphodiesterase acid like 3BENSG0000013076819
Q92484 / SMPDL3A / sphingomyelin phosphodiesterase acid like 3AENSG0000017259419


Protein motifs (from Interpro)
Interpro ID Name
 IPR004843  Calcineurin-like phosphoesterase domain, ApaH type
 IPR008139  Saposin B type domain
 IPR011001  Saposin-like
 IPR011160  Sphingomyelin phosphodiesterase
 IPR029052  Metallo-dependent phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006684 sphingomyelin metabolic process TAS
 biological_processGO:0006685 sphingomyelin catabolic process IDA
 biological_processGO:0006687 glycosphingolipid metabolic process TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0023021 termination of signal transduction IMP
 biological_processGO:0035307 positive regulation of protein dephosphorylation IMP
 biological_processGO:0042220 response to cocaine IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0043407 negative regulation of MAP kinase activity IMP
 biological_processGO:0046513 ceramide biosynthetic process IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042599 lamellar body IEA
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004767 sphingomyelin phosphodiesterase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016798 hydrolase activity, acting on glycosyl bonds IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061750 acid sphingomyelin phosphodiesterase activity IDA


Pathways (from Reactome)
Pathway description
Glycosphingolipid metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000991 Xanthomatosis "The presence of multiple xanthomas (xanthomata) in the skin. Xanthomas are yellowish, firm, lipid-laden nodules in the skin." [HPO:curators]
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 HP:0001103 Abnormality of the macula 
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001538 Protuberant abdomen "A thrusting or bulging out of the abdomen." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001935 Microcytic anemia 
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 HP:0001982 Sea-blue histiocytes 
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 HP:0002013 Vomiting 
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 HP:0002019 Constipation 
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 HP:0002063 Rigidity 
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 HP:0002094 Dyspnea 
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 HP:0002155 Hypertriglyceridemia 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002207 Diffuse reticular or finely nodular infiltrations 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002305 Athetosis "Athetosis (from the Greek word for changeable or unfixed ) refers to an inability to sustain the muscles of the fingers, toes, tongue, or any other group of muscles in a fixed position. Instead, posture is interrupted by slow, purposeless involuntary movements." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0003141 Increased beta-lipoproteins "An increase in the blood concentration of beta lipoprotein, which is a low-density lipoprotein involved in the blood transport of cholesterol." [HPO:curators]
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 HP:0003233 Decreased HDL cholesterol 
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 HP:0003593 Early onset 
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 HP:0003609 Electron microscopy of foam cells shows lamellar inclusions 
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 HP:0003621 Juvenile onset 
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 HP:0003812 Phenotypic variability 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004333 Foam cells on bone marrow biopsy 
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 HP:0006579 Prolonged neonatal jaundice 
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 HP:0008872 Feeding problems in infancy 
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 HP:0010729 Cherry red spot of the macula 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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