ENSG00000166473


Homo sapiens

Features
Gene ID: ENSG00000166473
  
Biological name :PKD1L2
  
Synonyms : PKD1L2 / polycystin 1 like 2 (gene/pseudogene) / Q7Z442
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q23.2
Gene start: 81100875
Gene end: 81220370
  
Corresponding Affymetrix probe sets: 1554371_at (Human Genome U133 Plus 2.0 Array)   1559261_a_at (Human Genome U133 Plus 2.0 Array)   1561849_at (Human Genome U133 Plus 2.0 Array)   244444_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000436389
Ensembl peptide - ENSP00000434644
Ensembl peptide - ENSP00000436309
Ensembl peptide - ENSP00000337397
Ensembl peptide - ENSP00000432818
Ensembl peptide - ENSP00000434417
NCBI entrez gene - 114780     See in Manteia.
OMIM - 607894
RefSeq - NM_001076780
RefSeq - NM_001278423
RefSeq - NM_001278425
RefSeq - NM_052892
RefSeq Peptide - NP_001070248
RefSeq Peptide - NP_001265352
RefSeq Peptide - NP_001265354
RefSeq Peptide - NP_443124
swissprot - Q7Z442
swissprot - H0YEQ7
Ensembl - ENSG00000166473
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PKDREJ / Q9NTG1 / polycystin family receptor for egg jellyENSG0000013094317
PKD1L1 / Q8TDX9 / polycystin 1 like 1, transient receptor potential channel interactingENSG0000015868314
PKD1 / P98161 / polycystin 1, transient receptor potential channel interactingENSG0000000871012
PKD1L3 / Q7Z443 / polycystin 1 like 3, transient receptor potential channel interactingENSG000002774819
PKD2 / Q13563 / polycystin 2, transient receptor potential cation channelENSG000001187622
PKD2L1 / Q9P0L9 / polycystin 2 like 1, transient receptor potential cation channelENSG000001075932
PKD2L2 / Q9NZM6 / polycystin 2 like 2, transient receptor potential cation channelENSG000000787950


Protein motifs (from Interpro)
Interpro ID Name
 IPR000922  D-galactoside/L-rhamnose binding SUEL lectin domain
 IPR001304  C-type lectin-like
 IPR002859  PKD/REJ-like domain
 IPR013041  Clathrin adaptor, appendage, Ig-like subdomain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR014010  REJ domain
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0050982 detection of mechanical stimulus IBA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0016020 membrane IBA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005262 calcium channel activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr